BAC Information

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BAC

Clone NameMSMg01-278K04
Chromosome17 (Build37)
Map Location 4,535,123 - 4,535,306
singlet/doubletsinglet
Overlap genenone
Upstream geneTfb1m, 1700102H20Rik, Nox3, 4930470H14Rik
Downstream genePpia-ps17_26.1, Arid1b, 5730437N04Rik, Ldhal6b, LOC100040282, LOC666919, LOC100040312, Zdhhc14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-278K04.T7 (MSMg01no278_k04.b1)MSMg01-278K04.TJ (MSMg01no278_k04.g1)
ACCAG416212AG416213
length942821
length of high quality
(start - end)
---184 (127 - 310)
definitionCHROMAT_FILE: MSMg01no278_k04.b1 PHD_FILE: MSMg01no278_k04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:01 2005CHROMAT_FILE: MSMg01no278_k04.g1 PHD_FILE: MSMg01no278_k04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAATTTTTTNAANNNNTTTTTATTTAATTTTCTCTAAAGTAAATACNTTC
TCCGCCTAAAATTTGTGGCAGCTATTATACTTACTATCCGCAGAGGATCC
GTGGAATTCATATTTTCCCCACTATATTTTTTTCCTATGACTCTATTTCT
AGAACACACTTTGTGGCTTTTCACCGAAAATCCATTAGTAAAGACAATTC
CTGTATAGAACACCCTGTTCTGATTTGCTAAACATTGAATCCTTTGACTT
AATTTCAACAGACTGTTCCCTACATTTTTACACTTAATAATGAATAACAA
ACAAATCAATAATATAAATCATAATGTTCATTTCTTATATTTTATAAAGT
TTTACTAATTATAATACCATTGTGTCTCTCTGTTTCTTTTTCCCTCCAAT
GACCATTTTTTTTTGAATTTACCTCCAATAAGGAAACTAATTTTTTTTTT
GTTTTTACTACCCCCATTTTTCATCTACCTTTTTATGGTAATTTTTTAAA
ATCGGTCATACCCTTACCTCTCCCCTTCCCATAATAATAATTTTCACCAC
CATTTTCACATACATTTTTTATTTTAAAATCCTCCCCCAATTGTGTTTAG
GTCCCCACCACAGCCCCCTCCCTCTCTTTTTTTCCTCCCCCTTTTATATT
TTTCCTATCATTCCTTTATTAATTACGAGGCACCACCCAGACTTTCTACC
CCCTAATATAACCCCCTTGTCTCTTACAGTCCCGGGTTTACCCTATACCC
CCTTTACTTTCGTACTTTTTCACTTTTTTTATTTTACCGCCCTCCCCCAC
CCCCTATACTTTCCACCTCCTCTTTACTATATTTTCTTTTTAATATCTAA
TGGCTGCTACCTATTGGTGCTCCCGGTTTTNTTGTTATTTATACTTTTCC
TACCGCTACGCCCCTCTTCATTCTTTGTCTCCATAGCATGTA
TTTTTTTTTTTTTTTTNTATTTTNNTTTTATTATTTTNCCCANNNNNNAA
GACCATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAATAAATACAAAACAAATCACCTC
GAGTACAGAAAGAAGATTGAATCTCTCAAGGCCGGTCTTGCTCACAGGAG
GCTGGATGTACACTGTGCATACTTTGAGCAAAGTCCACCCACCCCAGCAT
GTCTTTACTCCCCTGATATAACAAAAGCAATGTGATATAGCACAATATTC
TCTCAACCTGCATGAACGCAAGAAACCCTTATGAACTGGCTGGTTTTGTG
TGTCAACTTGACACAGGCTGGGTTTATCTCAGAGAAAGGAGTTTCAGTTG
GAGAAGAGCCTTTTTTTTATCCCCCCCCCCCCCCCTTATTCTAATTAATG
ATCGAGGGGATAGGTCTCATTGTGGAAGAAAGAAATAACTGGGCTAGGAG
GCATGGGCTCTATAATAAAACACGTTGAATATTCCAGGGGAAACCACGTT
TTTTAGCAACATCCTTCTCTCCATGGCCTCTGCAACAGTTCCCGCTTTCC
TGAACCGCCTGTAATTCCTGTCCTGACCCCCCTTTAATCGAGCATATATT
TTGTGCAAATCGTAACTAAAATAAACCCCTTTCCGTCCCCCAACTCGATT
TGGTGGCCCCCATGTCCTGTTCCATTAATGCTAAATCTTTGTTCCTAAGA
AACCCTTTATATCGGTTAAACATAATGGACCCTAAAAAAGGTATCCCTAA
TTCAAAATATAGTTGCGCCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no278_k04.g1 MSMg01no278_k04.g1 CHROMAT_FILE:
MSMg01no278_k04.g1 PHD_FILE: MSMg01no278_k04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:19:01 2005
         (184 letters)



>mm_chr17_4534923_4535506
          Length = 584

 Score =  340 bits (176), Expect = 2e-98
 Identities = 182/184 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aataaatacaaaacaaatcacctcgagtacagaaagaagattgaatctctcaaggccggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aataaatacaaaacaaatcacctcgagtacagaaagaagattgaatctctcaaggccggt 325

                                                                       
Query: 61  cttgctcacaggaggctggatgtacactgtgcatactttgagcaaagtccacccacccca 120
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 324 cttgctcacaggaggctggatgtacactgtgcatactttgagcaaagtccgcccacccca 265

                                                                       
Query: 121 gcatgtctttactcccctgatataacaaaagcaatgtgatatagcacaatattctctcaa 180
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 264 gcatgtctttactcccctgatataacaaaagcaatgtgatatagtacaatattctctcaa 205

               
Query: 181 cctg 184
           ||||
Sbjct: 204 cctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 184
Length of database: 584
Length adjustment: 8
Effective length of query: 176
Effective length of database: 576
Effective search space:   101376
Effective search space used:   101376
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)