Query= MSMg01no279_a06.b1 MSMg01no279_a06.b1 CHROMAT_FILE:
MSMg01no279_a06.b1 PHD_FILE: MSMg01no279_a06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:19:30 2005
(564 letters)
>mm_chr17_68716615_68717577
Length = 963
Score = 1038 bits (537), Expect = 0.0
Identities = 555/562 (98%), Gaps = 4/562 (0%)
Strand = Plus / Plus
Query: 5 gaattcttagatttggtcgttgattgcttggaa-aatcattggactgtgaggtcatgctc 63
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 205 gaattcttagatttggtcgttgattgcttggaacaatcattggactgtgaggtcatgctc 264
Query: 64 acttgatttcccatattcatgtttgtgtctagagcctcataacccacacactccattctt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acttgatttcccatattcatgtttgtgtctagagcctcataacccacacactccattctt 324
Query: 124 gatgcactttcttccccttggttggttctatcaatgatactgggattctgtaatcagatt 183
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 325 gatgcactttcttccccttggttggttctatcaatgatactgggattctgtaatcagaat 384
Query: 184 cattaagatttcatttccagtatttctggttttcttttcaaagtcacaaactacttgctg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cattaagatttcatttccagtatttctggttttcttttcaaagtcacaaactacttgctg 444
Query: 244 attttttttttgaacttttaaaatccacacatgacatttacctatttcagtgtctttgag 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 attttttttttgaacttttaaaatccacacatgacatttacctatttcagtgtctttgag 504
Query: 304 ttaattaggtaaagtccttcttctgagggacttatgttgctttgaccttttgtaatttgt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttaattaggtaaagtccttcttctgagggacttatgttgctttgaccttttgtaatttgt 564
Query: 364 gctgcaatctgcatattattgggggggggtggatgtctcttctattttgtaangagcatt 423
||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||
Sbjct: 565 gctgcaatctgcatatttttggggggg--tggatgtctcttctattttgtaaggagcatt 622
Query: 424 atcttatttttatttttacttttttt-gagattctattataattacaacatttcttcttt 482
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 623 atcttatttttatttttacttttttttgagattctattataattacaacatttcttcttt 682
Query: 483 ccaatttcttcctctataaaaccctctcacttatctctccttgctctctttcaaactcat 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 ccaatttcttcctctataaaaccctctcacttatctctccttgctctctttcaaactcat 742
Query: 543 gaccttatttttatccattgtt 564
||||||||||||||||||||||
Sbjct: 743 gaccttatttttatccattgtt 764
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 963
Length adjustment: 10
Effective length of query: 554
Effective length of database: 953
Effective search space: 527962
Effective search space used: 527962
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no279_a06.g1 MSMg01no279_a06.g1 CHROMAT_FILE:
MSMg01no279_a06.g1 PHD_FILE: MSMg01no279_a06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:19:30 2005
(534 letters)
>mm_chr17_68914060_68914993
Length = 934
Score = 928 bits (480), Expect = 0.0
Identities = 505/520 (97%), Gaps = 12/520 (2%)
Strand = Plus / Minus
Query: 1 caggctaatgagagatgaattcaagatacaaggcagatggaatttgatgaacacctacat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810 caggctaatgagagatgaattcaagatacaaggcagatggaatttgatgaacacctacat 751
Query: 61 acacatagctacacacacacacacacacacacacacacacacacacacacacacacacac 120
|||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 acacatagct----------acacacacacacacacacacacacacacacacacacacac 701
Query: 121 acacacacacacacatctaataaataaaagaaagcaatcctgggtgcccctggatcctct 180
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 atacacacacacacatctaataaataaaagaaagcaatcctgggtgcccctggatcctct 641
Query: 181 gtgaaccacacttttgggggatatagaagaagtgttatgttactctaggctgaacacagc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 gtgaaccacacttttgggggatatagaagaagtgttatgttactctaggctgaacacagc 581
Query: 241 cagcagaatacttttagcctgtgggaaagaaagtgaagcaaccctacaccggattcaacc 300
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 cagcagaataattttagcctgtgggaaagaaagtgaagcaaccctacaccggattcaacc 521
Query: 301 aggtgagaagctgggcaaagccagagtctgaaaggagacctagacatcggttccaagcag 360
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 520 aggtgagaagctgggcaaagccagagtctggaaggagacctagacatcggttccaagcag 461
Query: 361 tccatgcaggacactgggaaggaccatccaggggcaaagctcacatttgcaatcactcct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 tccatgcaggacactgggaaggaccatccaggggcaaagctcacatttgcaatcactcct 401
Query: 421 gtaaagatgggttgggcatctatgtcacagtttcccaaatgaccatatagtgtggggtta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 gtaaagatgggttgggcatctatgtcacagtttcccaaatgaccatatagtgtggggtta 341
Query: 481 ctctattttttctttttctttttccttttttttttttttt 520
||||||||||||||||||||||| |||||||||||||||
Sbjct: 340 ctctattttttctttttcttttt--ttttttttttttttt 303
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 52
Number of extensions: 25
Number of successful extensions: 25
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 934
Length adjustment: 10
Effective length of query: 524
Effective length of database: 924
Effective search space: 484176
Effective search space used: 484176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
