BAC Information

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BAC

Clone NameMSMg01-279C20
Chromosome17 (Build37)
Map Location 86,597,551 - 86,597,859
singlet/doubletsinglet
Overlap genePrkce
Upstream gene1700106N22Rik, EG668850, LOC383282, LOC100043902, Six3, LOC100043717, Six2, LOC100043903, Srbd1, LOC545228
Downstream geneEpas1, 1700090G07Rik, Atp6v1e2, Rhoq, Pigf, Cript, EG433144, Socs5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-279C20.T7 (MSMg01no279_c20.b1)MSMg01-279C20.TJ (MSMg01no279_c20.g1)
ACCAG416608AG416609
length743833
length of high quality
(start - end)
314 (46 - 359)125 (75 - 199)
definitionCHROMAT_FILE: MSMg01no279_c20.b1 PHD_FILE: MSMg01no279_c20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:42 2005CHROMAT_FILE: MSMg01no279_c20.g1 PHD_FILE: MSMg01no279_c20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACAAACTAAAGTTTCTAGCAAGCCTGCTCTGAGAAAGGGCGCTGT
TGCAAGGCAGCGTCCAGTCTGCAAGGCGAGTGGGGGAATAGTACACATGT
TCAAAGCCGAGTCTGCTCCAGGGCCGAGTCAGTGAGTGACACAGGTGGGA
AGCAGTGCAGATCTGAGGAGGTCGGGTTCCCGTGTGGATGTTGGTAGTTT
AGGAAGTTATCCCGCTGCAACTGAATGGGAATCATGGAACGGGCTTCGAC
AGTCTGTGGAAGGGGTGTAGGTACAGTGCTTACCTGAAGGGCTGCTGCTA
AGGGCACATTATCTTGTGCTGCACACACCTGTTAGGCCCTCCTCTGGGTT
TCTGGCTTGGCCTCTGTAGGCACTTTGTTTTTTCTTTATCCAGCTTCCCT
CTGGCTGGATAGAGAGGACTGGCTCAACTCAGCGCTTCCAAGTGTGACCA
AAGGACTCTGCAGTATGAAGGTGAAGTCCTAGTAGAGCAAAGGACACGAA
GATCTTCTTCTCCCGGTCCAGGCTTGGTCCGTTTCTGGCACTCACTCAGG
TCATGCTTTTTAGATCTGGGAGGCTTCTCCTGTATATGGAGGATATTTTG
AGAGATATTAGCAACCTACTCTCTAGAGTTGCAGAGTGAACGACTCTGAT
AAACAAGATCATGCTTGAATGCAATGGTAGTATATGCGTCTGG
CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTTTGCAACTGTGAGGAAGAGTGCAT
AAAAGAGAGATTGCATATGTAACCCTGTGCACATGCGCACACGTTGTGCT
TTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTAAN
ANAAAATTTACNNAAACTTTATTTTCTTTTATTTCTTAATTTTATTTTTT
TTCTTTACTCTTTTTTACCCTATTTCTTTCCTTTTATCAACTCTCCTTTT
TTACCATAACCACTACATCTTTTTTTTCTTTTCTTATACAACTTTAACAA
AAAAAAATTTTTTTTATAATTTCCCCAANACAAAACCCCATNAGATATAT
TAAAATTTTTTTATNTTTTTTCCCCCCCCCATAAAAAAAAAAAAAAATTT
TCCGGCGGGGGGGGTTGTTGTTTTTTTCCTCCCCTCCCCCCTATCCTTAT
TTTTTTCTTTCTTCTTTCTCCATCCTCTTATTTACCATTCCTTTACTACT
ATTCTTTCCCCTTATTCTATTTTCTTTTTCCCTCCCCCTATTTAATACCT
TTTTTTCCCTACCGCTTATCCTTTTTTATTTTTTTCTCCCATTTTCTTAT
ACTCTTTATCCCATTACCCCTTCTCCTATTATTAATATTATCTCTATTTT
ATCTCCCTTTTTCTCTCTCTCTCCATTCTTTCTCCTTATCCCCCCATTTC
CTTTATCTCTTTTAATTTAAATTTCATAGTAACGCTATTACTACCCTTTT
CTCCACTTCTCTTATTTATTTTTACCGTTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no279_c20.b1 MSMg01no279_c20.b1 CHROMAT_FILE:
MSMg01no279_c20.b1 PHD_FILE: MSMg01no279_c20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:19:42 2005
         (314 letters)



>mm_chr17_86597347_86598060
          Length = 714

 Score =  590 bits (305), Expect = e-173
 Identities = 308/309 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacaaactaaagtttctagcaagcctgctctgagaaagggcgctgttgcaaggca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacaaactaaagtttctagcaagcctgctctgagaaagggcgctgttgcaaggca 264

                                                                       
Query: 65  gcgtccagtctgcaaggcgagtgggggaatagtacacatgttcaaagccgagtctgctcc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gcgtccagtctgcaaggcgagtgggggaatagtacacatgttcaaagccgagtctgctcc 324

                                                                       
Query: 125 agggccgagtcagtgagtgacacaggtgggaagcagtgcagatctgaggaggtcgggttc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agggccgagtcagtgagtgacacaggtgggaagcagtgcagatctgaggaggtcgggttc 384

                                                                       
Query: 185 ccgtgtggatgttggtagtttaggaagttatcccgctgcaactgaatgggaatcatggaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ccgtgtggatgttggtagtttaggaagttatcccgctgcaactgaatgggaatcatggaa 444

                                                                       
Query: 245 cgggcttcgacagtctgtggaaggggtgtaggtacagtgcttacctgaagggctgctgct 304
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 caggcttcgacagtctgtggaaggggtgtaggtacagtgcttacctgaagggctgctgct 504

                    
Query: 305 aagggcaca 313
           |||||||||
Sbjct: 505 aagggcaca 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)