BAC Information

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BAC

Clone NameMSMg01-279F16
Chromosome17 (Build37)
Map Location 4,751,030 - 4,751,351
singlet/doubletsinglet
Overlap genenone
Upstream gene4930470H14Rik
Downstream genePpia-ps17_26.1, Arid1b, 5730437N04Rik, Ldhal6b, LOC100040282, LOC666919, LOC100040312, Zdhhc14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-279F16.T7 (MSMg01no279_f16.b1)MSMg01-279F16.TJ (MSMg01no279_f16.g1)
ACCAG416740AG416741
length753789
length of high quality
(start - end)
321 (46 - 366)289 (77 - 365)
definitionCHROMAT_FILE: MSMg01no279_f16.b1 PHD_FILE: MSMg01no279_f16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:55 2005CHROMAT_FILE: MSMg01no279_f16.g1 PHD_FILE: MSMg01no279_f16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCATCTTTCCTGTCTTCTCTTCCTTCTTGTTGGTGATCCAAAGCCC
TTCTCCCTCTTAAACTCCGAGGAGGCTGAGATTTGGGACCTGTGATGGTA
CCTGAAGGACATCATGGCACATGGACAGCCTTCTGATTGGTTAAACCATA
ATTCTGGACTAATCTTATTAAAGGTGCAGAGCTGGTGTGTGGAGTCTGAC
ATGCCCCCCCACCTCCGACCATGTCACAGGGAAACATGCTTTGATTTCTG
CAGATTTGGTATTATTCAGGCGGGTCTTTATTTTCATGGACTTTTAATAG
AACATATTCTGTTTGTTGTTCATCCTGCCCCACTTCAGTAAGCTTCCAGC
TGGGAGAATGAGGAGCCAGGGAATGTTTTTTCCCCTTTAGTGCCTTTGTA
TGTGTAGTACATACTACTGAAGACTCTTGGGTGTTTCTCCTGATGAGCCA
GGCTCCAGGAGTCTTTTGGAATGCAGCAGCAGACCATCACTATCAACTCA
TCTATATAGGAGCAAAGTGCAAGGGCTATTCTTAGAGCTCCCGTCTCTCT
GGATTCAGTTTTGTCTCTTGCCTTCAGCGACTGTGGAGTTCCTGCTTTGG
GTTATAGCTTGAGATATGTTTATGTGACAGACCACATCACCAAACCCTTA
CATAGCTCTGGTTTCTGTGTGAGGTGCCTTGGCAGGTTTGATTAGAAAGT
GCT
CCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGGAATAGTGCCAGGTGTGGGGGA
TTTGCTTGGGAAGATGGGAACTCGGCAGATGCATGGTTCCTGAGCAGAAG
TTACCAGCCACGTGGTAAAACGTGGATCAGACTAAATGGGTTATATTAAG
TGCTGATCTAGTCAGAGAAGAGCCTAGCTATATGGCCAAGGTATTTGTAA
ATATATCTTGAGTCTAAATCTTATTTCTGGGAAGCATGAAGCTGGGTGGA
AGGACCAGACCTCAATTCTACAGCAGCCTCGTCCCTCCAGCCTACAGAGT
AGTGCAAACATGATGGTGTTTTTACACTCCCCGCCCTAGCCACACTTTCT
GGCCTGATTTCCAGGGCTGGCTGTCCCTCTTCACAGATGAATGACCTTGG
GCAAAGGATCTGCCTTCCTGCCTATCTCCTCAAGCATGAAAAGAGAAGCA
TCCATCAGACAACCTCCACAGAGTACTGAGCGTGGTGCCTGTCACATGGT
CCATTACCTGTTCATTAACGTTGACTGTTACTTCAGTTATTTAGTGCTTG
GTATTTGATTGGCCGTCCTATGCTCAGCCTTGATTCCTCCTCTCGTGACT
TGAAAAATAATTCTCCCTACTTTCCTTATGAACAACAATGTGATGATAGT
GTTCTTGTTCCCATATAGGCCTACATAAGATTGTTCAGTTTTCCACCTTT
TGATCAGTTTTATTATTTTTTACTTCCTTTTCTGACTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no279_f16.b1 MSMg01no279_f16.b1 CHROMAT_FILE:
MSMg01no279_f16.b1 PHD_FILE: MSMg01no279_f16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:19:55 2005
         (321 letters)



>mm_chr17_4750826_4751552
          Length = 727

 Score =  522 bits (270), Expect = e-152
 Identities = 307/322 (95%), Gaps = 6/322 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccatctttcctgtcttctcttccttcttgttggtgatccaaagcccttctccctc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 gaattccatctttcctgtcttctcttccttcttgttggtgatccaaagcccttctccctc 467

                                                                       
Query: 65  ttaaactccgaggaggctgagatttgggacctgtgatggtacctgaaggacatcatggca 124
           |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 466 ttaagctccgaggaggctgagatttggggcctgtgatggtacctgaaggacatcatggca 407

                                                                       
Query: 125 catggacagccttctgattggttaaaccataattct-ggactaatcttattaaaggtgca 183
           ||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||
Sbjct: 406 catggacagccttctgattggttaaaccatagtttttggactaatcttattaaaggtgca 347

                                                                       
Query: 184 gagctggtgtgtggagtctgacatgcccc-----cccacctccgaccatgtcacagggaa 238
           ||||||||||||||||||| |||| ||||     |||||| ||||||||||||| |||||
Sbjct: 346 gagctggtgtgtggagtcttacatccccctcccccccacccccgaccatgtcactgggaa 287

                                                                       
Query: 239 acatgctttgatttctgcagatttggtattattcaggcgggtctttattttcatggactt 298
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 286 acatgctttgatttctgcagatttggtattattcaggcgggtctttatttccatggactt 227

                                 
Query: 299 ttaatagaacatattctgtttg 320
           ||||||||||||||||||||||
Sbjct: 226 ttaatagaacatattctgtttg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 727
Length adjustment: 9
Effective length of query: 312
Effective length of database: 718
Effective search space:   224016
Effective search space used:   224016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)