BAC Information

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BAC

Clone NameMSMg01-280D04
Chromosome17 (Build37)
Map Location 35,787,563 - 35,963,852
singlet/doubletdoublet
Overlap geneVars2, Gtf2h4, Ddr1, LOC100043663, Ier3, Flot1
Upstream geneCrebl1, Tnxb, EG632302, C4b, Stk19-ps1, Skiv2l-ps1, LOC100043024, Cyp21a2-ps, Cyp21a1, C4a, Stk19, Dom3z, Skiv2l, Rdbp, Cfb, C2, Zbtb12, Ehmt2, Slc44a4, Neu1, 1110038B12Rik, LOC667548, Hspa1b, Hspa1a, Hspa1l, Lsm2, Vars, D17H6S56E-3, Ng23, Msh5, Clic1, Ddah2, AU023871, G6b, Ly6g6c, Ly6g6d, Ly6g6e, Bat5, Ly6g5c, Ly6g5b, Csnk2b, Bat4, D17H6S53E, Apom, LOC100043621, Bat3, Bat2, Aif1, EG667612, Lst1, Ltb, Tnf, Lta, Nfkbil1, Atp6v1g2, Bat1a, H2-D1, H2-Q1, EG667636, LOC100043066, H2-Q2, EG625285, LOC436493, H2-Q8, EG667662, H2-Q6, H2-Q7, EG667669, H2-Q10, Pou5f1, Tcf19, Cchcr1, Psors1c2, Cdsn, LOC674169, 2300002M23Rik, LOC672682, Dpcr1, EG433102
Downstream geneTubb5, Mdc1, Nrm, 2310014H01Rik, Dhx16, 2310061I04Rik, 2610110G12Rik, Mrps18b, LOC100043673, Ppp1r10, LOC100043674, LOC667766, Abcf1, Prr3, Gna-rs1, H2-T24, H2-T23, H2-T22, EG547347, LOC667782, H2-Bl, EG667792, C920025E04Rik, H2-T10, LOC630294, LOC672718, ENSMUSG00000073403, LOC675325, LOC626268, EG667977, LOC625785, H2-T3, LOC100043127, EG667827, LOC435525, LOC677333, LOC100043134, LOC625881, Rpp21, Trim39, H2-M10.2, H2-M10.1, H2-M10.3, Gm318, LOC100043140, LOC674152, LOC383240, LOC224752, H2-M10.4, H2-M11, LOC667896, H2-M9, LOC620340, H2-M1, LOC667912, LOC100043158, LOC667915, H2-M10.5, H2-M10.6
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BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-280D04.T7 (MSMg01no280_d04.b1)MSMg01-280D04.TJ (MSMg01no280_d04.g1)
ACCAG417352AG417353
length705704
length of high quality
(start - end)		239 (107 - 345)247 (109 - 355)
definitionCHROMAT_FILE: MSMg01no280_d04.b1 PHD_FILE: MSMg01no280_d04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:59 2005CHROMAT_FILE: MSMg01no280_d04.g1 PHD_FILE: MSMg01no280_d04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:59 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,963,617 - 35,963,852)(35,787,563 - 35,787,799)
sequence
GACTCACTATTTGCAGAGGATCCGCGGAATTCTTCAGCCTTCTCGTGTCC
AGCACACACGGCAAATGCTGCAGGCACTGACCTGTGCTTCACCCATATTT
CCCCGTCAAATGTGCAACGCATGAATGACAGGGCCCAGCTATACCTTCTT
GTCATGGAAAGGGCCACCCAAGGCTCACTTTCTGTCATTCAAGGCTGTCT
CCTTCCTCAGCCTCTCTTTTGATCACCGAAGTTTTGGGGCACCCTATGCA
CAAGGGAAGAGGTTTTTCCTCTTCTGAACAGGTGCAGACCCAGAATACAG
CTTGGTGAGTGGGGGGACAGGGCGGTTCTTCACTTTGGTTTCTCTTTTGT
TACCGCCCGCCCTCTAGAGAGGCACAGTCTACCTCTTGGTCAATCGCATT
CATGGACTGACTGACATGCCTGCCTTTCTATCTTTCTGTCTGTCTGTCTT
GGGTTTTCAGCTGAATGCTCCAGCCTACATGTATGTGCAGATACACACAC
GCACAGTCTCTCCTTGGCCTAAGGTTCAATGATTGTGCTAACCTGGCTGG
CCAGTGATCCCCCAAGACTCACCTGTCCCATGAGGGGATTACAAGTGTGT
GCCATTTAGCACTTTATCAACTGAGCTATCTCTCCAGTCCCTACTTGAGT
CCCTGTCTATCTGTCTGTCTGCTGTCTGTCTGTCTGCCTGTCTTGGGGTT
TTCAT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCGA
AATACAGTGGTTTGTTCCGTGTGTCCAGTGCGTCTGTGAGCACAGGGCAT
TTCCCCGGGCACTGCATGCCAGGGTCTTGGACTGATTCTCCTGTTCACTG
AGCAGGGGTGACAACTGACTCTCTCTCTACACCACAGAGGCCTGGAATAT
AAGTGAAGTAAGTCCAGACAGATTGACAGACAAAAAGACAGGCATGCATG
TGCACATGCACTCACACACACATCTGTGAGTGCATACCCGCCTCTCCAGC
TGAGCTCTTTTGAACACCCATGCTGCTGTAGGTCTCTACACTCCTTTTTT
TTCCACACGCCGCCTGTAGCAATCCTGAATGACCATAACAGATCTCATTC
TCTTCTCTTAAAAAGCTTAAAGAGGGTCGTTCTCCTGGGGTCCAACAGCA
GTCAAGAAACCAGGTACCATACAGGGTCTTGGTTTAAGCAGGATTTTAAT
TGCAACCCCAGTGTCCTGTGTGGCCTGCATGCCTGATCAGGGTGGAAAGC
CAGGTAGAGAAAGCTCAGAGGGAAGTGAGGGGTCAGCTGAAAAGTGACCA
ATAGGTTCCCCTGTGCTGTAGGGAGGCAGTTGTTAAAAGTGTATGGCACC
TGTCCATGTGGACACAGGTGTGATGCACCTGAGATTGCATGTGTGATGCA
CCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no280_d04.b1 MSMg01no280_d04.b1 CHROMAT_FILE:
MSMg01no280_d04.b1 PHD_FILE: MSMg01no280_d04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:59 2005
         (239 letters)



>mm_chr17_35963417_35964055
          Length = 639

 Score =  449 bits (232), Expect = e-131
 Identities = 235/236 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaatgtgcaacgcatgaatgacagggcccagctataccttcttgtcatggaaagggcca 60
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 caaatgtgcaatgcatgaatgacagggcccagctataccttcttgtcatggaaagggcca 377

                                                                       
Query: 61  cccaaggctcactttctgtcattcaaggctgtctccttcctcagcctctcttttgatcac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 cccaaggctcactttctgtcattcaaggctgtctccttcctcagcctctcttttgatcac 317

                                                                       
Query: 121 cgaagttttggggcaccctatgcacaagggaagaggtttttcctcttctgaacaggtgca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 cgaagttttggggcaccctatgcacaagggaagaggtttttcctcttctgaacaggtgca 257

                                                                   
Query: 181 gacccagaatacagcttggtgagtggggggacagggcggttcttcactttggtttc 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 gacccagaatacagcttggtgagtggggggacagggcggttcttcactttggtttc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no280_d04.g1 MSMg01no280_d04.g1 CHROMAT_FILE:
MSMg01no280_d04.g1 PHD_FILE: MSMg01no280_d04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:59 2005
         (247 letters)



>mm_chr17_35787363_35788009
          Length = 647

 Score =  427 bits (221), Expect = e-124
 Identities = 233/237 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcactgcatgccagggtcttggactgattctcctgttcactgagcaggggtgacaactga 60
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 201 gcactgcatgccagggtcttggactgtttctcctgttcactgagcaggggtgacaactga 260

                                                                       
Query: 61  ctctctctctacaccacagaggcctggaatataagtgaagtaagtccagacagattgaca 120
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctctccctctacaccacagaggcctggaatataagtgaagtaagtccagacagattgaca 320

                                                                       
Query: 121 gacaaaaagacaggcatgcatgtgcacatgcactcacacacacatctgtgagtgcatacc 180
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gacaaaaagacagacatgcatgtgcacatgcactcacacacacatctgtgagtgcatacc 380

                                                                    
Query: 181 cgcctctccagctgagctcttttgaacacccatgctgctgtaggtctctacactcct 237
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcctctccagctgagctcttttgaacacccatgctgctgtaggtctctacactcct 437


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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