BAC Information

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BAC

Clone NameMSMg01-280I02
Chromosome17 (Build37)
Map Location 27,362,357 - 27,362,594
singlet/doubletsinglet
Overlap genenone
Upstream geneItfg3, Luc7l, EG383229, EG240055, C230078M08Rik, Dusp1, EG666668, Ergic1, Atp6v0e, A930001N09Rik, Bnip1, Nkx2-5, Kifc1, Phf1, Cuta, Syngap1, Zbtb9, Bak1, Ggnbp1, Itpr3, 2900010M23Rik, Ihpk3, Lemd2
Downstream geneLOC100042713, ENSMUSG00000073430, Grm4, LOC677010, Hmga1, AI413582, Nudt3, Rps10, Pacsin1, Spdef, LOC100042744, D17Wsu92e, EG666682, Snrpc, F830021D11Rik, Taf11, Anks1, Tcp11, 4930526A20Rik, Scube3, LOC100042764, Zfp523, Def6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-280I02.T7 (MSMg01no280_i02.b1)MSMg01-280I02.TJ (MSMg01no280_i02.g1)
ACCAG417580AG417581
length722726
length of high quality
(start - end)
239 (128 - 366)---
definitionCHROMAT_FILE: MSMg01no280_i02.b1 PHD_FILE: MSMg01no280_i02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:21:21 2005CHROMAT_FILE: MSMg01no280_i02.g1 PHD_FILE: MSMg01no280_i02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:21:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTGCTCCATTCCACCTAGATTAGAATGTGGTTGCTCCCAACTCCAG
GTGTCTACTTCCAGCTCTTTTGGCATATTGAGGAATCTGAGTGCGCAGCT
TGGCAGTCCCTTGCAGGAGGCTTGCACATTTAGTTCTCACCAGCTTTCTG
AGAACCCCACCTTTAAGGACTGGTCATTTTTCATTTTTATGCCTTCAGCT
CAGACGTGTCTAGAAATCCTGGGTTCTTTTAAGCTCCACTTCTCTCTAGC
CATGGTCCTCTGCGTCTTTGAGGGAAACATCCAGAAAATGAGGCAGTATT
TGAGCAGTCTCTTCTTCTCGTCAGCTCTCACAGGTATCTCCTGGCCTTTC
CATCCTCTCCCATGTCCTGTGTCCTGGGGGCCTGGGTGACCTAAGTCCAG
CCATTCACTGAGAAGGTTTTCAGATCATAGCTCTAACCCCTTGACACCTC
CCTGTGTTCGGTGTCTGCCCTCCCCGATTTAGTATCATTTGCACATTTAC
TTAACTTGTCTTTGCCGCCTCATTCCAGGTCCCTAATGAAGATGCTCCGG
AAGTGTGTGGCAAACCATATTTCCCAGGTCACTACGTTAAGAGCATTAAG
TGGCTAATAGTTCCGCCCATTCACGGGGAGAGAGAGGCCATCATGTGCCC
CCATGTGATCTGATCCGCCTCN
CTTGGCGGGGGTGGGCCCACCGGGCGTTGGGTNNNTCCCTCTNTTCCNCC
NCTNNNNNNNCTCCATGCAGTGGGTGGCCTGGCGGCCGCCTGGCTTCCCC
AGNNGANNGANANNANAGAAGGATTCCCGAAAGAAGAGGGNNNGNNNAGN
NGNNNNGNNNGGAAANNGNGGAGANNNGGGGTTTTACCCGAAAAAAGGGG
GGGNNNNNNNNNNAAAAGANNAANNNNAAAAAAAAAGGGGGAAGGGGGNN
AAAAAAAAAAAAGNNAAGGGAGAAGGGGGNGAAAAGGGGGGGNNGGGGGG
GGGGGGGGGGGAAAGGAAAGGAAAAAAAGGGGGGGGGGAGGAAGGGAGGG
AAGGGGGGGGGGGGGGGNNNGGAGGGGGGGGGGGGGGGGGGGGGGAAAAG
GGGGGGGGGGGGGGGGGGGGGAGAGAGAGGAAGAAGGAAAGGGGGGGGGG
GGGAGGAGGGGGATTTTTTTTTTTTTTTTTTTTNANAGAGGGGGGGGGGG
GAAGAGGGGGGGTGGAGAGAGAGGGAGAGGGAGGGGNAGNGGGGGGGGGG
GGAGGAGGTTTTTTTTTTTTTTTTTTTTAATACCCCCCCCCCCCGCCCCC
CGCCCCCCCCCTCAGGAGGTAATGTGGGGGAGGGGCGCCGCCGCCAAATC
CGCCGTTACGATCCCCCCACCCGCCTACCCCGCTCCCTCTCCGCTCCCCC
CCCTTTCCTTGCGGCCAAAAAAACAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no280_i02.b1 MSMg01no280_i02.b1 CHROMAT_FILE:
MSMg01no280_i02.b1 PHD_FILE: MSMg01no280_i02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:21 2005
         (239 letters)



>mm_chr17_27362157_27362795
          Length = 639

 Score =  460 bits (238), Expect = e-134
 Identities = 238/238 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgaggaatctgagtgcgcagcttggcagtcccttgcaggaggcttgcacatttagttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 ttgaggaatctgagtgcgcagcttggcagtcccttgcaggaggcttgcacatttagttct 379

                                                                       
Query: 61  caccagctttctgagaaccccacctttaaggactggtcatttttcatttttatgccttca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 caccagctttctgagaaccccacctttaaggactggtcatttttcatttttatgccttca 319

                                                                       
Query: 121 gctcagacgtgtctagaaatcctgggttcttttaagctccacttctctctagccatggtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 gctcagacgtgtctagaaatcctgggttcttttaagctccacttctctctagccatggtc 259

                                                                     
Query: 181 ctctgcgtctttgagggaaacatccagaaaatgaggcagtatttgagcagtctcttct 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 ctctgcgtctttgagggaaacatccagaaaatgaggcagtatttgagcagtctcttct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)