BAC Information

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BAC

Clone NameMSMg01-288H10
Chromosome17 (Build37)
Map Location 54,838,993 - 54,839,239
singlet/doubletsinglet
Overlap genenone
Upstream geneEG629065, 4932415M13Rik, Ck-ps1, EG637939, Sult1c2, LOC100043826, LOC100043471, EG668523, LOC629121, Gm324, Sult1c1, LOC100043829, EG435531, Slc5a7, LOC668529, 1700025K24Rik, Trp53-ps, LOC240117
Downstream geneEG629178, LOC100043833, LOC100043485, LOC677496, St6gal2, LOC383258, Pot1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-288H10.T7 (MSMg01no288_h10.b1)MSMg01-288H10.TJ (MSMg01no288_h10.g1)
ACCAG418283AG418284
length763771
length of high quality
(start - end)
321 (45 - 365)245 (75 - 319)
definitionCHROMAT_FILE: MSMg01no288_h10.b1 PHD_FILE: MSMg01no288_h10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:22:33 2005CHROMAT_FILE: MSMg01no288_h10.g1 PHD_FILE: MSMg01no288_h10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:22:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATTATATAATTTACATATTATCCCTCTATTGGATGTAGGGTTAATG
GAGATTTTTTTCCCCCAAACTGTGCCTTGCTGATTTGTCCTATTGACTAT
GTCCTTTGCCTTACATATCCTGTTTCAGTTTCAAGAGGCCCTGTTTGATC
TTAGTACCTGAACCTTTGGAATTCTATTTAAGAAATACCACCTCCCCTCA
TGCCAATGACTTTGAGACACTTGCCCAATTTTTCTATTAGATTCAGTCTA
TCTGGCTTTATGTTGAGGTCCTTGATTCACTTGGACTTGATCTTTATGCA
AGGTGACACATATGTTTTCTATTTTCATCCCCCCTCATCCAACTACTATT
TATACCAGCACCATTTATTGCACATGCCTTCTTCTTCCATTGTATATTTT
TTGCTCCTATGTCAAAGAATAAGTGTACATAAGAATAAGTGTTTGATTCT
ATTTCTGGGTCTTCAATTCTATCTCATTGATCAAACTATATGCCTCTGTG
CCAATAACATGCAGGTTTTTTTTTAATTACTATTGTTCTGTAGTACAGCT
TGAAGTCAGAGGTCTTGAATCCCCCTGAGGTTCTTTTATTGTTAACAAAT
GTTTTACCTATCCTGAGGTTTTTTGCTTTTCCATATGAAATTGAGAATTG
CTCTTTCCATGTTTTTGAAAAAATTGTGTTGGAATTTTGATAATGATTGC
GTTCAATCTGCAN
ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATTTAGTGTTGCTCATATGTACAGTG
CTTATGCCTGACTTTTGGGATTTGATAACTTAATGGAGGGGGGGGGGGAG
ATGCTTCCCTGGAACAAACAAATCCTCTCTTATCAGCAATGAATTGCTCT
TTTTTTTTTTTTTTTTAATCTCAAAGCCCAAAAGTGACACTGCAGGTTGT
CATACCAACTTGAATAAAGTAATTTGGGAAATAGAGGAAGATCTAAAAGT
CAAGTTAGGATAACAACACTGTTTTTTTTATTACCACCCACAGGCATCCC
ATTTTCCTATAATTTAAATAGTTGACCCANGGACAAAGCCCAACATATCA
TTCCATGGATATTGACTTGACCCCTCCTGAAAGAAAAAAAAAAATGGGTT
GGCGGTTGAGAGAAACTTCTGAAAAACTCAAGCCTATGTTTTTGTTCAGG
AAAGCACTCTGCCTGTGGTAACTGGACTTGAAAGAGTATTAAACTCAATG
CTCCATGGCATGCTAATCATAAAACAGATATGATCATTCCTTCCTCCACC
CACCTGTTTCTTGGTTTCAAATAGTGCTTCTTCTATAATATTCACTATGA
ACCCCCCTTACCATTGCTTTAATCTTGCTCGATAATGTGTCATTGCTTCG
GTCCCCTCACCACCTGCCTTGAAAGTTTACTCTTAACCATAGACTCCCCC
GGTACATTTTGTGATTTCGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no288_h10.g1 MSMg01no288_h10.g1 CHROMAT_FILE:
MSMg01no288_h10.g1 PHD_FILE: MSMg01no288_h10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:33 2005
         (245 letters)



>mm_chr17_54838793_54839439
          Length = 647

 Score =  424 bits (219), Expect = e-123
 Identities = 240/247 (97%), Gaps = 2/247 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttagtgttgctcatatgtacagtgcttatgcctgacttttgggatttgataacttaat 60
           |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attttgtgttgttcatatgtacagtgcttatgcctgacttttgggatttgataacttaat 260

                                                                       
Query: 61  ggaggggggggggga-gatgcttccctggaacaaacaaatcctctcttatcagcaatgaa 119
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggagggggggggggaagatgcttccctggaacaaacaaatcctctcttatcagcaatgaa 320

                                                                       
Query: 120 ttgctcttttttttttttttttt-aatctcaaagcccaaaagtgacactgcaggttgtca 178
           ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct: 321 ttgctcttttttttttttttttttaatctcaaagcccaaacgtgacactgcaggttgtca 380

                                                                       
Query: 179 taccaacttgaataaagtaatttgggaaatagaggaagatctaaaagtcaagttaggata 238
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 381 aaccaacttgaataaagtaatttgggaaatagaggaagatctaaaagtcaagttagaata 440

                  
Query: 239 acaacac 245
           |||||||
Sbjct: 441 acaacac 447


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 647
Length adjustment: 9
Effective length of query: 236
Effective length of database: 638
Effective search space:   150568
Effective search space used:   150568
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)