Query= MSMg01no289_p19.b1 MSMg01no289_p19.b1 CHROMAT_FILE:
MSMg01no289_p19.b1 PHD_FILE: MSMg01no289_p19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:24 2005
(510 letters)
>mm_chr17_61599303_61600212
Length = 910
Score = 752 bits (389), Expect = 0.0
Identities = 489/547 (89%), Gaps = 40/547 (7%)
Strand = Plus / Plus
Query: 2 tactttaagtatgttttaaacattgcttgatgttctctggatggcaaagggctgtcattt 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 tactttaagtatgttttaaacattgcttgatgttctctggatggcaaagggctgtcattt 261
Query: 62 cttcatattccatctcataataaattctgggtcctgaataatatatttaaagaataattg 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 cttcatattccatctcataataaattctgggtcctgaataatatatttaaagaataattg 321
Query: 122 accagtaaatggttagatctagacctagacttccaggtactacctagtctttatttattt 181
|||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct: 322 accagtaaatggctagatctagacctagacttccaggtactacctagtctttctttcttt 381
Query: 182 atttatttatttatttatttattt--------------------------------attt 209
||| ||| ||| ||| ||| ||| ||||
Sbjct: 382 ctttctttctttctttctttctttctttctttctttctttctttctttctttctttattt 441
Query: 210 atttatttttcttttttctttttttaaaattatatattttcttcacttgcatttcaaatg 269
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct: 442 atttatttttcttttttctttttttaaaattagatattttcttcatttgcatttcaaatg 501
Query: 270 ctatcccgaaagtcccctataccccccccctgccctgttccccaacccaacgactcccac 329
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 502 ctatcccgaaagtcccctataccctttccctgccctgttccccaacccaacgactcccac 561
Query: 330 ttcctggccttggcattcccctgtactggggcacataatcttcgcaagaccaagggcctc 389
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 562 ttcctggccttggcattcccctgtactggggcacataatcttcacaagaccaagggcctc 621
Query: 390 tcctcccattgatggcctactaggccaaactc------atattcaactagatacacacac 443
|||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 622 tcctcccattgatggcctactaggccaaactctgctacatattcaactagatacacac-- 679
Query: 444 tatgggaggtactggttagttcatattgttgttccccatctagtcttatctcaaatgtta 503
| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 680 tgtgggaggtattggttagttcatattgttgttccccatctagtcttatctcaaaagtta 739
Query: 504 tcttcac 510
|||||||
Sbjct: 740 tcttcac 746
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 910
Length adjustment: 10
Effective length of query: 500
Effective length of database: 900
Effective search space: 450000
Effective search space used: 450000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no289_p19.g1 MSMg01no289_p19.g1 CHROMAT_FILE:
MSMg01no289_p19.g1 PHD_FILE: MSMg01no289_p19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:25 2005
(486 letters)
>mm_chr17_61747557_61748444
Length = 888
Score = 878 bits (454), Expect = 0.0
Identities = 479/488 (98%), Gaps = 2/488 (0%)
Strand = Plus / Minus
Query: 1 ctaattctatacatcatcttaatccatgattttaatgtaaaaacaactaatgccttaagt 60
|||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 688 ctaattctatacgtcatcttaatccatgattttaatgtaaaaacaaccaatgccttaagt 629
Query: 61 ttttaaaagcaatgatatgtgtggttaagaagttatagttaataattaacttcttatgtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 ttttaaaagcaatgatatgtgtggttaagaagttatagttaataattaacttcttatgtt 569
Query: 121 gctaatctctgtgaaatggtaca--ttttttttttttggatggagtgtggagtcttacat 178
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 568 gctaatctctgtgaaatggtacattttttttttttttggatggagtgtggagtcttacat 509
Query: 179 gactcagagaaatttataaatccaaccctggaaacataagactcttaagctgacctataa 238
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 508 gactcagagaaatttataaacccaaccctggaaacataagactcttaagctgacctataa 449
Query: 239 ggattcttagacatgtataacttttcctggccacattccgggattgtaccacccatgccc 298
||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 448 ggattcttaaacatgtataacttttcctggccacattccgggattgtacaagccatgccc 389
Query: 299 aaatgcaggaaggaaaaagactctactggagccacctggattcttggcagagagctccgg 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 aaatgcaggaaggaaaaagactctactggagccacctggattcttggcagagagctccgg 329
Query: 359 ctttcacattcctgccaataaccacaacaaactcaatggtttatgatctagaaagagatg 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 328 ctttcacattcctgccaataaccacaacaaactcaatggtttatgatctagaaagagttg 269
Query: 419 ggggagtttatctggactggataaattgaaattattcatgtctttctaacggagctccac 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 ggggagtttatctggactggataaattgaaattattcatgtctttctaacggagctccac 209
Query: 479 aacataaa 486
||||||||
Sbjct: 208 aacataaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 888
Length adjustment: 10
Effective length of query: 476
Effective length of database: 878
Effective search space: 417928
Effective search space used: 417928
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
