BAC Information

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BAC

Clone NameMSMg01-290D14
Chromosome17 (Build37)
Map Location 58,494,947 - 58,495,229
singlet/doubletsinglet
Overlap geneCntnap5c
Upstream geneEmr1, EG224916, LOC674419
Downstream geneLOC620408, EG545216, LOC668648, 2610034M16Rik, Nudt12, 4930505H01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-290D14.T7 (MSMg01no290_d14.b1)MSMg01-290D14.TJ (MSMg01no290_d14.g1)
ACCAG419563AG419564
length726727
length of high quality
(start - end)
679 (48 - 726)287 (79 - 365)
definitionCHROMAT_FILE: MSMg01no290_d14.b1 PHD_FILE: MSMg01no290_d14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:42 2005CHROMAT_FILE: MSMg01no290_d14.g1 PHD_FILE: MSMg01no290_d14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCACCTGTTGCATACTGAATGGCTGAGAAGCACATGAAAATGG
CTGAGAAGCACATCAGGTGACAGCAGATGCTGGTGAGGATGTGGAGAAAG
AGGAACACTCTTCTATAGTTGGTGGAATTGCAAGCTGGTACAACCAGTCT
AGAAATAAGTCTGGCAGTTCCTCAGAAAATTGGACATAGTACTACCGAAG
ATAGTTCCCAGGAGATATTCCAACTGGTAATAAGGACACATACTCCATTA
TGCTCATACAGCCTTATTTATAATAGTCAGAAGCTGGAAAGAACCCAGAT
GTCTCTCAACATAGGAATGGATATACAAAATGTGGTACATTTACACAATG
GAGTACTACTCAGCAATTGAAAACAATGAATTCATGAATTTTTTTAGGCA
AATGGATGGATCTAGAGGATATCATCCTGAGTGAGGTAACCCAATCACAA
AAGAGCACACATGATATGCACTCACTGATAAGTGAATATTATCCCAGAAA
CAGAATATCAAATATACAATTTGCAAAACACATGAAACTCAAGAAGATGG
AAGACCAAAGTGTGGATACTTCGTTCCTTCTTAGAATGGGGAACAAAATA
CACATGGAAGGAGTTACAGAGACAAAGCTCAGAGCTGAGTTAAAAGGAAG
GACCATTCAGAGACTGCCCCACCTGG
CACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAATATGGAGTCCAAGGGAAAAA
CTGACATCTTTAGTAGTTTAATGAGATCTGTGAGCACATGACAGATCAAT
AAGTATCTCAAGTAACTCTTCTGGATATTAGGAATATCTCATATACATAT
TAAGACTGTGCATTGTTCAGAGATAAGGAGCTGGATCAGATTTGCTCACA
TCCGTTTGGGTTTCCTTTCTGTTTCTGTGATAAAGCACCCTGACAAAAAG
CAACTTGGTGGATAATTCTACATTTCTACATCACAGCCCATCATTGCAGA
GACATCATGGAGACAGGTGATGGAAACCTCCCTCTCACATTGTATATACA
GTCAAGAGAAGAGAAAAATAAATGGGTGCAGGCCTGCATGTTTCATTGCT
TGCTTGCTTTGTCCTCTCCTGTAGATACAGCTCAGAATCACTTGTCTAAG
AAATAGTGTCATTCCAAGTGAGCTGGGTACTCCTCCATTAATCAAAAATA
ATGATAGTGCACTAGAGATGTGCCCAGAGGATAAGGTTATATAAACAATT
CTTCAGATAAAGCTCTCTTTAAATCTTTTTGCACAGTTGAATCCCAATAT
CCATCAAGTCAGAAGTTAAACTCTTAATCTCATCATTTAGCATAGTTTCC
TCATTCAAGAAAGCTCCCTCTTCTAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no290_d14.g1 MSMg01no290_d14.g1 CHROMAT_FILE:
MSMg01no290_d14.g1 PHD_FILE: MSMg01no290_d14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:42 2005
         (287 letters)



>mm_chr17_58494747_58495429
          Length = 683

 Score =  505 bits (261), Expect = e-147
 Identities = 279/289 (96%), Gaps = 8/289 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatatggagtccaagggaaaaactgacatctttagtagtttaatgagatctgtgagcaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatatggagtccaagggaaaaactgacatctttagtagtttaatgagatctgtgagcaca 260

                                                                       
Query: 61  tgacagatcaataagtatctcaagtaactcttctgga--tattaggaatatctcatatac 118
           |||||||||||||||||||||||||||||||||||||  |      ||||||||||||||
Sbjct: 261 tgacagatcaataagtatctcaagtaactcttctggacct------aatatctcatatac 314

                                                                       
Query: 119 atattaagactgtgcattgttcagagataaggagctggatcagatttgctcacatccgtt 178
           || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 atgtgaagactgtgcattgttcagagataaggagctggatcagatttgctcacatccgtt 374

                                                                       
Query: 179 tgggtttcctttctgtttctgtgataaagcaccctgacaaaaagcaacttggtggataat 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 tgggtttcctttctgtttctgtgataaagcaccctgacaaaaagcaacttggtggataat 434

                                                            
Query: 239 tctacatttctacatcacagcccatcattgcagagacatcatggagaca 287
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 tctacatttctacatcacagcccatcattgcagagacatcatggagaca 483


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 683
Length adjustment: 9
Effective length of query: 278
Effective length of database: 674
Effective search space:   187372
Effective search space used:   187372
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)