BAC Information

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BAC

Clone NameMSMg01-290H03
Chromosome17 (Build37)
Map Location 30,895,642 - 30,896,078
singlet/doubletsinglet
Overlap geneDnahc8
Upstream geneMdga1, LOC100042885, LOC100042888, Zfand3, Btbd9, EG623169, Glo1, LOC666942, 1700097N02Rik
Downstream geneGlp1r, Umodl1, Abcg1, Tff3, Tff2, LOC100042904, Tff1, Tmprss3, Ubash3a, LOC100042906, Tsga2, EG667056, Slc37a1, Pde9a, Wdr4, 1500032D16Rik, Pknox1, Cbs, LOC623242, U2af1, Cryaa
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-290H03.T7 (MSMg01no290_h03.b1)MSMg01-290H03.TJ (MSMg01no290_h03.g1)
ACCAG419722AG419723
length762754
length of high quality
(start - end)
437 (73 - 509)286 (75 - 360)
definitionCHROMAT_FILE: MSMg01no290_h03.b1 PHD_FILE: MSMg01no290_h03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:00 2005CHROMAT_FILE: MSMg01no290_h03.g1 PHD_FILE: MSMg01no290_h03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAAGATACCGCGGA
ATTCCTCGCTCATTACTTCAACTACACTGACCTTCCAAAGAACTCCAAGG
ATCCTACTGCCCCAGTCTTGCTAGAGCTAGGGTAACAAGGTTTATGCTAC
TAGGCCGGGCATTTACAAAGGTACTGGCTATCTGGCTTTTACAAAGGTTC
TGGCTCTCCAAACTCATGTCTTCCCATTTACGAAGCAGACACTACCTACT
GAGCCATCTCCACAGCCCCTGTGCTTGAAAAGTATTAATGGTGGTTCCCA
CCTGCCAGTCAGTTCTCTGGTAGTTCACCCTGCACCTGCTGCCATACCTC
ATCTTCCCGGACCACAGTACTACCAGAGAGCCGATACCACTCAGTGGTAA
ATTTCAGCCGCGTGTATTTCCTAAACACTGTAGTCTTTGCATGGGTGAGG
TCGCATCTTGCCCCATTATAGTTCAGTCCTCTGCCCGAGCTCCAGTTCTC
TCATCTGTGTTAAGTGCCTAATGCTATCAGGCTCGTGAAGTCATATGGTG
GGGAACTGCAAACTTCACACACACCAGGTAGGAACTTCTTCAGATGTGAT
AGACCCTTCTTCAGTCCTTCCCTCCTGTGACCCTGTAATGCCCTGATATA
GTTGAAGGGTCATGTTGACCCGAAAACTCACCCTGCCCCCTGCAGGCCTG
AAATTGAATCCCCTTGGGCTTTCCTCCTAAAGCAAAGGGAGCTTGCTGCC
CGTTCCTCCCAA
ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCATGTTCTTTTAAAGATTTGTTTAGT
TTTATGTTCATTGATGTTTTGTCCCCATGTATTCCTGTGGAGATGTCAGA
TCCCCTGGAACTGGAGTTACAGTCGGGAAAGGCCTCGTGGGTGCTGGGAA
TTGAACCTGGGTCTTCTGGAAGACCAGCCAGTGCTTTCAACAGCTGAGCT
GTCTTGCTAGCCCCCCACATTTCATGTTTTTAACATAAGGAAGATGATGT
TTGTGTATAGGGACAGGAAAGGATCATAAGTCAGCCATCTGAAGGACTGT
TCACCCTGATAATGTTTTTACTTGCCCCCCCCTTTCAAAACTTCCTATCT
TCTCAGTCTTAATTTTCTCAGTTTGATTTAAATAGCATACAGTAAGAGGC
TTCATTATGGCATCTTTATACTTTGCTGTGGTTGACATATGTTCTTTCTC
CTGTTCCCCTGTATTGTCCTCTTCTCTTCCCAATGACTCCCTTCCATCTT
TTCACAGCACACAATCTATTGTTTTATAGCTGAAGAGTCTGGACTTTATA
GGGCTAGGGCAAATAAGCATTAACAGGGTGAAGTGGCCGAGTTATTAAAA
TGTTACCTTGAGAAAATTAATCATCTGGTATGCCCTGCATTCTTGCACGT
TACTTCTGGTCCAACCCGCCTTCAACGCGCTGGTGAAAAATAGAAGTTCC
GGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no290_h03.b1 MSMg01no290_h03.b1 CHROMAT_FILE:
MSMg01no290_h03.b1 PHD_FILE: MSMg01no290_h03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:00 2005
         (437 letters)



>mm_chr17_30895442_30896278
          Length = 837

 Score =  830 bits (429), Expect = 0.0
 Identities = 435/437 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tacactgaccttccaaagaactccaaggatcctactgccccagtcttgctagagctaggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tacactgaccttccaaagaactccaaggatcctactgccccagtcttgctagagctaggg 260

                                                                       
Query: 61  taacaaggtttatgctactaggccgggcatttacaaaggtactggctatctggcttttac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taacaaggtttatgctactaggccgggcatttacaaaggtactggctatctggcttttac 320

                                                                       
Query: 121 aaaggttctggctctccaaactcatgtcttcccatttacgaagcagacactacctactga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaggttctggctctccaaactcatgtcttcccatttacgaagcagacactacctactga 380

                                                                       
Query: 181 gccatctccacagcccctgtgcttgaaaagtattaatggtggttcccacctgccagtcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gccatctccacagcccctgtgcttgaaaagtattaatggtggttcccacctgccagtcag 440

                                                                       
Query: 241 ttctctggtagttcaccctgcacctgctgccatacctcatcttcccggaccacagtacta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 441 ttctctggtagttcaccctgcacctgctgccatacctcatcttcccggaccacggtacta 500

                                                                       
Query: 301 ccagagagccgataccactcagtggtaaatttcagccgcgtgtatttcctaaacactgta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccagagagccgataccactcagtggtaaatttcagccgcgtgtatttcctaaacactgta 560

                                                                       
Query: 361 gtctttgcatgggtgaggtcgcatcttgccccattatagttcagtcctctgcccgagctc 420
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 561 gtctttgcatgggtgaggtcgcatcttgccccattaaagttcagtcctctgcccgagctc 620

                            
Query: 421 cagttctctcatctgtg 437
           |||||||||||||||||
Sbjct: 621 cagttctctcatctgtg 637


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 437
Length of database: 837
Length adjustment: 9
Effective length of query: 428
Effective length of database: 828
Effective search space:   354384
Effective search space used:   354384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)