BAC Information

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BAC

Clone NameMSMg01-290H16
Chromosome17 (Build37)
Map Location 58,254,030 - 58,254,345
singlet/doubletsinglet
Overlap geneCntnap5c
Upstream geneCd70, Tnfsf14, C3, Gpr108, Trip10, LOC668635, Vav1, Emr1, EG224916, LOC674419
Downstream geneLOC620408, EG545216, LOC668648, 2610034M16Rik, Nudt12, 4930505H01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-290H16.T7 (MSMg01no290_h16.b1)MSMg01-290H16.TJ (MSMg01no290_h16.g1)
ACCAG419747AG419748
length726726
length of high quality
(start - end)
320 (48 - 367)287 (78 - 364)
definitionCHROMAT_FILE: MSMg01no290_h16.b1 PHD_FILE: MSMg01no290_h16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:03 2005CHROMAT_FILE: MSMg01no290_h16.g1 PHD_FILE: MSMg01no290_h16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCATATTTGATTCCAGCCCAGAAATCAAAAGTAGAATAGCATATA
CTTTCCCCTCCTCTTCATCAAATAGACCTGGTGATGACTTAAAAAGCTTT
TGATCATTCATTCATTCATTCATTCACTATGTCAGAGCCCACTATTTTCT
GGCCTGAAAAGCTGCTTCTAACTTCTGACAAATATGGTCTAGTGTCTGGT
GTGTGTGGTAGCATGTGTGTGCATACATGTGTGTGCATATTTGTGTAGGC
CCAAGGTCAATGCCAACTTTTTTCCTCAGTTTCCCTTCCTTAGACTTTTG
AGACAGAATATCTTACTATTATTGCCCACCCCTCACTGGTTTGGCTACAC
TGTGGAGGAATAATCAGAGATCCTACTGCCTCTTCTTCAGTGATAAGATT
ATAGATGAATGCAAACATGTCTAACTTTTATGTAAGTTTTTTTTGGGGGG
TTTTTTTTTCTTTCCATTTTTTATTACGTATTTAGCTCATTTACATTTCC
AATGCTATACCAAAAGTCCCCCATACCCACCCACCCCCACTCCCCTACAC
ACCCACTCCCCCCTTTTTGGCCCTGGCTTTCCCCTGTACTGGAGCAAACA
AAGTTTACGTGTCCAAATGGGCCTCTCTTTCAAGTGATGGCCGAATAGGC
CATCTTTTGATAATATGCACCTAGAG
ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCACTGACTTGTTACACTCTTCTA
TTGGTGGGAGATAAGAAATCATGTGCATGTACATGTGTGCATGTGTATAA
CTGTGTGTTTATGTTATCTCGTCATGAATGCCAGAGGTCAATGTCCTCCA
CAATTACTCTCCAACTTAGTTTTGGGAACAGCATCTCTGCCTGAAACCTG
AACTCACCAGTCCTGCTACATGAGCACCGTTGCTCGACCTATCTATGCTT
CCTCTGTCATGGAAACTGCTGGCTATGTTACTTGGGTTCCAGTGAAATGA
ACTCAGGTCCTTATGCTTGTTTTCCCCAACCCTCCATTGGTTTAGCTATT
TTCCCAGATTAAAACAAACAAACAAACAAACAAACAAACCAACAAAAACA
AACAAACAAACAAAAGAAAACAACCAAAAATGACTTCTGAAACATGGGAA
CAAGAATAAAGTGGATCCTGAATATGATGAGAATAGTCAATAATAGTCAT
CCCTGTTTTCTGTATATTGAAATATTTGAGTGTTATAGCTTATAGTGAAT
GGTAAGAAATATCTGTGCCTTAATGGAGAATGGAGCCTGAAAAAGGTATG
CACAGCTACTTTTGGAATGCACATATCCTGTTGAAACAGCTTATGTTGAT
AGAACATAATAAACCATCCTAAGACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no290_h16.b1 MSMg01no290_h16.b1 CHROMAT_FILE:
MSMg01no290_h16.b1 PHD_FILE: MSMg01no290_h16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:03 2005
         (320 letters)



>mm_chr17_58253826_58254545
          Length = 720

 Score =  549 bits (284), Expect = e-161
 Identities = 308/316 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatatttgattccagcccagaaatcaaaagtagaatagcatatactttcccctcc 64
           |||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 205 gaattcatatttcatttcagcccagaaatcaaaagtagaatagcgtatactttcccctcc 264

                                                                       
Query: 65  tcttcatcaaatagacctggtgatgacttaaaaagcttttgatcattcattcattcattc 124
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcttcatcaaatagaactggtgatgacttaaaaagcttttgatcattcattcattcattc 324

                                                                       
Query: 125 attcactatgtcagagcccactattttctggcctgaaaagctgcttctaacttctgacaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 attcactatgtcagagcccactattttctggcctgaaaagctgcttctaacttctgacaa 384

                                                                       
Query: 185 atatggtctagtgtctggtgtgtgtggtagcatgtgtgtgcatacatgtgtgtgcatatt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atatggtctagtgtctggtgtgtgtggtagcatgtgtgtgcatacatgtgtgtgcatatt 444

                                                                       
Query: 245 tgtgtaggcccaaggtcaatgccaacttttttcctcagtttcccttccttagacttttga 304
           ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct: 445 tgtgtaggcccaaggtcaatgccaatttttttcctcagtttccctttcttagacttttga 504

                           
Query: 305 gacagaatatcttact 320
           || || ||||||||||
Sbjct: 505 gataggatatcttact 520


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)