BAC Information

Click to search

BAC

Clone NameMSMg01-290K19
Chromosome17 (Build37)
Map Location 50,710,686 - 50,711,065
singlet/doubletsinglet
Overlap genePlcl2
Upstream geneKif6, EG668470, Rftn1, EG668475, EG628747, LOC100043818, Dazl
Downstream geneEG654432, Tbc1d5, LOC100043451, LOC100043452
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-290K19.T7 (MSMg01no290_k19.b1)MSMg01-290K19.TJ (MSMg01no290_k19.g1)
ACCAG419888AG419889
length775760
length of high quality
(start - end)
379 (128 - 506)352 (389 - 740)
definitionCHROMAT_FILE: MSMg01no290_k19.b1 PHD_FILE: MSMg01no290_k19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:18 2005CHROMAT_FILE: MSMg01no290_k19.g1 PHD_FILE: MSMg01no290_k19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAAACTAATTTCCCCTGAAAATCAAGGAATGCTCTTCACCTCTGCG
CCATCAATCCAGACCAGGAAAGAGCATTTTTATAACTAGAAAACTATTCA
TAGTCAGCAACTAAGTTTTGATTTGAATTTCTTAAGAGGAAAAAGTAAAA
AAACTTTCTGAGGAAAACCAAGGAGAAAATAATTAAAATCTTGCCAATTA
CTGAAGTAATATACAGTTTTGTGGCAAACATTTGCACTCACTAACTTAGT
TAACAGAGGGATTCATTGAAAGTGGAAGAAAAGAAGGAAACAAAATTCAC
AACTAGTTGAAAGCACACACTCACACAAACAATACCGATACACGTGTGGC
ATGCAGGGTGATAAAAGTATTGTGATGGAAAGTAAAACAAGAGATGGGGA
GACAAGAGCTGCTCTGAATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGCGTCTCTTTTTCTCCTCCTCCTTTTCCCCGTTCTTCCCCG
CTCTTCTTTTTCCTTTTTTCTTCCCGCGCGTGTCCTCTTTCGTGTGTGGT
TTCGTCCTTTTCGCCTTTCCCCGCCTTTTTTCCTCCCGGTTTTTCCCTTC
CCTTTTCTCTTTTTTCTTTTTTTTGCCTCTTCTTTTTTCTGTTCTCCTCT
TCTTTTCTCTTTTCCCTCCCTCCTTTCTTTTTTTCCCCCCCTTTTTCTTC
TTTTCCCCCCTCTTCTTTTTCTTTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGTTAGAGGCTAGAAAAATATCCC
GGGAGCCGAAGGGCGGCCTACACAGCTCCAAAATGAGATCGACATAGGAT
TCCCTTTGACTCGCCCTGGTTGGGACTACAACATGGTTAAAGGTAGGGAG
AGCTTGAAATCTATTGCCAGGCTCTGGTCTCCAAGGTTCCTCAAAACAGC
CCACTAATTTGGCTAAGATAAGAGAAGGTATATTACGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAAGAAAGAGAACAAGATTTATTGTAGACCACACCAGAAATTTGACTAGA
ATCTTGGCCACAGTGGTAAGAGGGAAAAAAAGAGACAGGACCTAGACAGA
TAGGGAACCTGGGCAACAGAAGATCAATGTGTTTAACAGAATTAAGTGAG
TTGGGGTACCAAGCCTCAGCTAAAAATGCTCAGCTGTGTCAGATTGAAGT
TACTTATTTGGGTTACACCCTTTGAAACTGGAAGCGGTGGCTAAAGGAAT
CCAGAAAAAACAAAGACTGCAACTCAGATCCCCACCCTAACTACACCAAG
GCAAGTAAGAGAATTCTTGGACACCGCTGGCTTCTGCAGGCTCTGGATAC
CTGGGTTTTGTGACCTTAGCTGCCCCATTGTACCCACTATCTAAGGAAGG
TGAGATGTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no290_k19.b1 MSMg01no290_k19.b1 CHROMAT_FILE:
MSMg01no290_k19.b1 PHD_FILE: MSMg01no290_k19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:18 2005
         (379 letters)



>mm_chr17_50710525_50711304
          Length = 780

 Score =  688 bits (356), Expect = 0.0
 Identities = 374/380 (98%), Gaps = 1/380 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttttataactagaaaactattcatagtcagcaactaagttttgatttgaatttcttaaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ttttataactagaaaactattcatagtcagcaactaagttttgatttgaatttcttaaga 482

                                                                       
Query: 61  ggaaaaagt-aaaaaaactttctgaggaaaaccaaggagaaaataattaaaatcttgcca 119
           ||||| ||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 481 ggaaagagtaaaaaaaactttctgaggaaagccaaggagaaaataattaaaatcttgcca 422

                                                                       
Query: 120 attactgaagtaatatacagttttgtggcaaacatttgcactcactaacttagttaacag 179
           ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 421 attactgaagtaacatacagttttgtggcaaacatttgcactcattaacttagttaacag 362

                                                                       
Query: 180 agggattcattgaaagtggaagaaaagaaggaaacaaaattcacaactagttgaaagcac 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 agggattcattgaaagtggaagaaaagaaggaaacaaaattcacaactagttgaaagcac 302

                                                                       
Query: 240 acactcacacaaacaataccgatacacgtgtggcatgcagggtgataaaagtattgtgat 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 acactcacacaaacaataccgatacacgtgtggcatgcagggtgataaaagtattgtgat 242

                                                                       
Query: 300 ggaaagtaaaacaagagatggggagacaagagctgctctgaatgtgtgtgtgtgtgtgtg 359
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 241 ggaaagtaaaacaagagatggggagacaagagctgctctgagtgtgtgtgtgtgtgtgtg 182

                               
Query: 360 tgtgtgtgtgtgtgtgtgtg 379
           ||||||||||||||||||||
Sbjct: 181 tgtgtgtgtgtgtgtgtgtg 162


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 780
Length adjustment: 9
Effective length of query: 370
Effective length of database: 771
Effective search space:   285270
Effective search space used:   285270
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)