Query= MSMg01no290_n07.b1 MSMg01no290_n07.b1 CHROMAT_FILE:
MSMg01no290_n07.b1 PHD_FILE: MSMg01no290_n07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:29 2005
(452 letters)
>mm_chr17_56095113_56095964
Length = 852
Score = 828 bits (428), Expect = 0.0
Identities = 446/452 (98%)
Strand = Plus / Plus
Query: 1 cgcaaatgaatgagttaatgaatccagaaacaaatctgcacttgaatcaaccaataaata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cgcaaatgaatgagttaatgaatccagaaacaaatctgcacttgaatcaaccaataaata 260
Query: 61 aatgtgtgagtgagatagtgagtaactgagtagaggaatgaattagtgaagaatttagtg 120
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatgtgtgagtgagatggtgagtaactgagtagaggaatgaattagtgaagaatttagtg 320
Query: 121 aatatgtgaacgaatgaagtgtgagtatgaatgaacggcaggacggagcaaatccatgaa 180
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatacgtgaacgaatgaagtgtgagtatgaatgaacggcaggacggagcaaatccatgaa 380
Query: 181 tagctgtctgagggcgattgcgaacgtgtgaatgaatgagagtcacaaacgaagacttag 240
||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 381 tagctgtctgagggcgaaagcgaacatgtgaatgaatgagagtcacaaacgaagacttag 440
Query: 241 tgtgtgagggatgaaccggcagagcggacgctgaccccggtcctgctcccaccagtcaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtgtgagggatgaaccggcagagcggacgctgaccccggtcctgctcccaccagtcaag 500
Query: 301 ccggaccctccggaaggcgtgcgcctgcgcacagcgggacagcgcctgcaggtgctctgg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccggaccctccggaaggcgtgcgcctgcgcacagcgggacagcgcctgcaggtgctctgg 560
Query: 361 catccccctgcttcctggcccttcccggacatcttctctctcaagtaccgactccgctac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 catccccctgcttcctggcccttcccggacatcttctctctcaagtaccgactccgctac 620
Query: 421 cggcgccgaggagcctcccacttccgccaggt 452
||||||||||||||||| ||||||||||||||
Sbjct: 621 cggcgccgaggagcctctcacttccgccaggt 652
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 452
Length of database: 852
Length adjustment: 10
Effective length of query: 442
Effective length of database: 842
Effective search space: 372164
Effective search space used: 372164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no290_n07.g1 MSMg01no290_n07.g1 CHROMAT_FILE:
MSMg01no290_n07.g1 PHD_FILE: MSMg01no290_n07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:29 2005
(243 letters)
>mm_chr17_56278548_56279192
Length = 645
Score = 377 bits (195), Expect = e-109
Identities = 238/267 (89%), Gaps = 25/267 (9%)
Strand = Plus / Minus
Query: 1 ggcctac-acagccctgaggtcgggagggactcctgggtcctatg-cctctctgcctggt 58
||||||| ||||||||||||||||||||||||||||||||| | | ||||||||||||||
Sbjct: 358 ggcctacaacagccctgaggtcgggagggactcctgggtcccaggtcctctctgcctggt 299
Query: 59 ctctgtcactgaacccccaacccccgccgcctaaggtcggtgtcactctcatctgaggtt 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ctctgtcactgaacccccaacccccgccgcctaaggtcggtgtcactctcatctgaggtt 239
Query: 119 cccaggtctctgtcacctgcctgaggtctgtgttgctc---------------------- 156
||||||||||||||||||||||||||||||||||||||
Sbjct: 238 cccaggtctctgtcacctgcctgaggtctgtgttgctccccatctgaggtctgtgttgct 179
Query: 157 -tccaggtctccgggaccctgttaggtctgtgtcacactgcctgacgtctgtgtcacccc 215
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 178 ctccaggtctccgggaccctggcaggtctgtgtcacactgcctgacgtctgtgtcacccc 119
Query: 216 caacttcttattttttacctgctcgat 242
|||||||||||||||||||||||||||
Sbjct: 118 caacttcttattttttacctgctcgat 92
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 645
Length adjustment: 9
Effective length of query: 234
Effective length of database: 636
Effective search space: 148824
Effective search space used: 148824
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
