BAC Information

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BAC

Clone NameMSMg01-291A03
Chromosome17 (Build37)
Map Location 17,785,563 - 17,785,881
singlet/doubletsinglet
Overlap geneEG665140
Upstream geneLOC100041407, LOC665072, EG383211, LOC626785, LOC665085, BC002059, BC018101, Zfp97, EG382161, LOC676238, EG626854, LOC100041965, Riok2, Lix1, LOC383297, Lnpep
Downstream geneLOC100041519, EG626942, 4930546H06Rik, Has1, Fpr1, Fpr-rs2, LOC665183, LOC670250, EG665187, LOC546683, Fprl1, LOC627060, Fpr-rs4, EG637021, EG665210, Vmn2r92, EG665227, EG627132, LOC100041612, Vmn2r95, Vmn2r-ps114, EG433070
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-291A03.T7 (MSMg01no291_a03.b1)MSMg01-291A03.TJ (MSMg01no291_a03.g1)
ACCAG420130AG420131
length729678
length of high quality
(start - end)
685 (45 - 729)327 (76 - 402)
definitionCHROMAT_FILE: MSMg01no291_a03.b1 PHD_FILE: MSMg01no291_a03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:41 2005CHROMAT_FILE: MSMg01no291_a03.g1 PHD_FILE: MSMg01no291_a03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:41 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTTACTGGCTATATAAGTTTTCTTTCCAACCAGTAATGGAGGAGTG
TTCCCCTTGCTCCACATCCTCATCAGCATGAGTTGTCATGTGTGTTTTTG
ACCTTAGCTATTCTGATATTTGTAGTAGTTTTTATTTGTATTTCTCTGAT
GGCTAAGAATGTTGAACATTAAGTGTTTCTCCAGCATTTGAGATTCCGCT
TTTGAGGATTCTCTGTTTAGAACTATATCCTTTTTTTTTTAAGTTGGATT
ATATGATTTTTTGATAACAAATTTCTTTATTTCTTGATGTGGACTTGGGG
AAAATCTTTTCCCAGGTGTGTGTATTTTGTTAGATTATAAGATGCATAAA
CCAGTTTCTGCTTACGTCCATTTGCTTGAAATATTATTTTCTACTACTAC
ATGGCGTGATATTTACCCTTGATGTCAAGATGTGTTCCTTTAATGTAGCA
GAAGGATTAATGCTGTTTTCATGTCCATTCTATTATTCAGACCTGCAAAT
AAAAAAAGAGGAAAACACACACACACAAACACTCACACACATGCACACGC
ACGCGCGCACACACACACACACACACACACACACACACACATCCTACTGC
TAACACCACCAATACCACCACCAATTAAAAACAACAGCAAAATACCAGGA
ATTAACAAATGGTGCTGAGGGAAATTTCT
CAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGTGCAATATTAGCCTCCACTAAAG
AGATTGTTCTGGCCCGTTAGGCCCTGCGTTGAAGAACAGAGCATTTTTGT
TTGTTTGTTTGTTTGTTTGTTTTTTGAGACAGGGTTTCTCTGTATAGCCC
TGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTTGGCTCGAACTCAGAA
ATCTGCCTGTCTCTGCCTCCCAAGAGCTGGGACTAAAGGCGTGCGCTCTG
TCCGAATGAATGGGAACCGGAAATTGGATGTTTATAACCAAGAAAAGCAG
AATTTCATCCAGCACTTCTCCCAGATCGTGAAAGTGCTGACTGAGGAGGA
GCTGGGACACCGAGAGACACGGGATGCTATTACCCTACTCAANNGAGTCT
ACACTGCATGTTGTANGAGCCAGTACAGCTGGGGTTTGACCATGGTACAA
GCCTTTTCAGATCTGGGGGAACCAAGGAACAGGATGTTTAAAATTTTTCC
CGGGCCCCTTAATTGGTGGTTGGGGGGAAAAAAAGTGCCTCTAGTTTTTT
TTTCCCCGGGGGAAAAAGAACTCTGGGGGTTTTTTTCCCCCCCTTCCCCC
CCCGGGAATAATTTGCGGGGGGGAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no291_a03.g1 MSMg01no291_a03.g1 CHROMAT_FILE:
MSMg01no291_a03.g1 PHD_FILE: MSMg01no291_a03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:41 2005
         (327 letters)



>mm_chr17_17785355_17786081
          Length = 727

 Score =  551 bits (285), Expect = e-161
 Identities = 314/327 (96%), Gaps = 8/327 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtgcaatattagcctccactaaagagattgttctggcccgttaggccctgcgttgaaga 60
           |||||||||||||||||||||||||||||||||||||||||  ||   ||||||||||||
Sbjct: 209 agtgcaatattagcctccactaaagagattgttctggcccgggagaatctgcgttgaaga 268

                                                                       
Query: 61  acagagcatttttgtttgtttgtttgtttgtttgttttttgagacagggtttctctgtat 120
           |||||||||||||   ||||||||||||||||||||    ||||||||||||||||||||
Sbjct: 269 acagagcattttt---tgtttgtttgtttgtttgtt----gagacagggtttctctgtat 321

                                                                       
Query: 121 agccctggctgtcctggaactcactttgtagaccaggcttggctcgaactcagaaatctg 180
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 322 agccctggctgtcctggaactcactttgtagaccaggct-ggctcgaactcagaaatctg 380

                                                                       
Query: 181 cctgtctctgcctcccaagagctgggactaaaggcgtgcgctctgtccgaatgaatggga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctgtctctgcctcccaagagctgggactaaaggcgtgcgctctgtccgaatgaatggga 440

                                                                       
Query: 241 accggaaattggatgtttataaccaagaaaagcagaatttcatccagcacttctcccaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 accggaaattggatgtttataaccaagaaaagcagaatttcatccagcacttctcccaga 500

                                      
Query: 301 tcgtgaaagtgctgactgaggaggagc 327
           |||||||||||||||||||||||||||
Sbjct: 501 tcgtgaaagtgctgactgaggaggagc 527


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 727
Length adjustment: 9
Effective length of query: 318
Effective length of database: 718
Effective search space:   228324
Effective search space used:   228324
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)