BAC Information

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BAC

Clone NameMSMg01-291D09
Chromosome17 (Build37)
Map Location 56,425,146 - 56,617,719
singlet/doubletdoublet
Overlap geneM6prbp1, Arrdc5, Uhrf1, Jmjd2b, Ptprs, EG668592
Upstream geneLOC677496, St6gal2, LOC383258, Pot1b, Emr4, Zfp119, BC011426, EG433125, BC031441, Ebi3, Ccdc94, Shd, Fsd1, AW049765, Mpnd, Sh3gl1, Chaf1a, Ubxd1, Hdgfrp2, S3-12, 2310076L09Rik, Lrg1, Sema6b, Tnfaip8l1, D17Wsu104e, Dpp9, LOC668573, A230051N06Rik, Fem1a, Ticam1
Downstream geneZnrf4, Safb2, Safb, 2410015M20Rik, Rpl36, Lonp1, LOC619718, Tmem146, Ranbp3, Ccpn-ps, AI662250, Ndufa11, Fut4-ps1, Nrtn, Dus3l, Gm546, Rfx2, Acsbg2, 1700061G19Rik, Mllt1, Asah3, Clpp, Alkbh7, Pspn, Gtf2f1, Khsrp, Slc25a41, Slc25a23, Crb3, Dennd1c, Tubb4, Tnfsf9, Cd70, Tnfsf14, C3, Gpr108, Trip10, LOC668635, Vav1, Emr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-291D09.T7 (MSMg01no291_d09.b1)MSMg01-291D09.TJ (MSMg01no291_d09.g1)
ACCAG420273AG420274
length691806
length of high quality
(start - end)
136 (74 - 209)232 (185 - 416)
definitionCHROMAT_FILE: MSMg01no291_d09.b1 PHD_FILE: MSMg01no291_d09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:56 2005CHROMAT_FILE: MSMg01no291_d09.g1 PHD_FILE: MSMg01no291_d09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:57 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,617,584 - 56,617,719)(56,425,146 - 56,425,377)
sequence
AAGGCTTTTCCAAAACGGTGATTGGGAGGATGACTCACCTCACTCTTCCT
ACAGCCCTAATTCTTCCGCTGTTGCCACACAGAGACAGGACATCGAGGCA
CAACCCGATCAAGGAGCCTGCGTCATGAGAAGCAAACGGAGGGTCATAGC
ATTTCTTACTGTGAGAATACCTCTTCAGCACAGTATTGGGAACAGTCTGC
CAGGAAGTGGGTTCTGTGAATGGTCGTCTCTGAGCAGCGAAAGGAACATC
TCACTAGGCTGAGGACCAGCATGTACCAGGGCCCTGGGGCAGGCCGGAAC
CTGCGTGGTAGGAGTAGGGTCAAAGGAGGAGCAGGAGTCTACTGTGACTG
AAGCAGAGCCCCCCCTTCCCGCCCTAAGTGGCTGAACACATAACCGGCTT
TGGGTTGATATATTGTTGCCTGTCTATGCTCTGTCATCTGCAGGCCGATT
GCTCTGATTCGTCACTTCTGTGCAAATGGCATTTAACTCAGCGTGTGATC
TGACACGGGATGAATGTTCTCTGGAAGCTTCCAGACTCTCAGACAAGATG
TTTATTCGTTTCCCTTCGCTGCTCAAGTAGATACACCGGGCAGAAGCGTT
TACTCAGCACGGACACCCTATGCCCGGTCTGCGATTCTCCTCGCATGATT
GGCCCGTTCTGTTCTGGCTTGGAACTTCCTGACAGAACCCA
NNTATGCTTTTTTTTCCCTTCTNCACTTCTNTTTTTTCNATAACTNNCNT
TCCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTTTCCCCGAAATTCCTCAGTCAGGAGCTGGGGGTGT
GATTAGGGGTGGAGCCCCCTTTATGACCGGATGGGGCGTGGTCAGCATTC
AAGCCACCTGGGCTATTTCAGTAAGACCCTGTCAAGAAAATACCCTACTG
GCTGTCCAGTTATACACTGGGTTTGGTGAATGGAGGTTCTACAGATCGGA
GAGCTGAGTTTCTGGAACAGCGCATGTAAAAGTCATGGGGCAGATCTCAC
GTATGCATCTGTTGTCTCTGCAATTCGTCTTCTTGGGTTTAGGTTCCCTT
CCAAAGGCCGTGTCTAATGGTGTGGACCACAATCTAAACTCTGCTTAGTA
GTCGAGGGGCCAGACCCTCCCCCCACCCCCAGTGTAGCCTTTTGCTCTGG
GTTCGGTGGCATCCAGAGGGCATTCTTGACTGAATGTGGCCAACCTTAAA
GACCTTCTTGCCCAGTACAGGTGAGGACGGCGAGAACTGTCACATGTGCC
CTGTGCTGTGCACGCAGCAGGACTTGTTAGGTCCAGACACGGTCTCAATA
AGGAACCAACTGACTTAGTACTGACCTTCTTCATCGTTTTGCTGGAGGAT
GGGCAGGTTTTTCTTGCAGATTAGTCCAGTCCTCGACGAGAACACTCACT
GCACGTCGTTACTGGGCCTCATTAAAAACCCCTTCACTGATAAATGTTCT
TTATGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no291_d09.b1 MSMg01no291_d09.b1 CHROMAT_FILE:
MSMg01no291_d09.b1 PHD_FILE: MSMg01no291_d09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:56 2005
         (136 letters)



>mm_chr17_56617384_56617919
          Length = 536

 Score =  240 bits (124), Expect = 3e-68
 Identities = 133/136 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   gccacacagagacaggacatcgaggcacaacccgatcaaggagcctgcgtcatgagaagc 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 336 gccacacagagacaggacatcgaggcacaacccgagcaaggagcctgcgtcatgagaagc 277

                                                                       
Query: 61  aaacggagggtcatagcatttcttactgtgagaatacctcttcagcacagtattgggaac 120
           ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct: 276 aaacggagggtcatagcatttctgactgtgagaatacctcttcagcacaatattgggaac 217

                           
Query: 121 agtctgccaggaagtg 136
           ||||||||||||||||
Sbjct: 216 agtctgccaggaagtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 136
Length of database: 536
Length adjustment: 8
Effective length of query: 128
Effective length of database: 528
Effective search space:    67584
Effective search space used:    67584
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no291_d09.g1 MSMg01no291_d09.g1 CHROMAT_FILE:
MSMg01no291_d09.g1 PHD_FILE: MSMg01no291_d09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:57 2005
         (232 letters)



>mm_chr17_56424946_56425577
          Length = 632

 Score =  433 bits (224), Expect = e-126
 Identities = 230/232 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggcgtggtcagcattcaagccacctgggctatttcagtaagaccctgtcaagaaaatacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggcgtggtcagcattcaagccacctgggctatttcagtaagaccctgtcaagaaaatacc 260

                                                                       
Query: 61  ctactggctgtccagttatacactgggtttggtgaatggaggttctacagatcggagagc 120
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 ctactggctgtccagttatacactgggtttggtggatggaggttctacagatcggagagc 320

                                                                       
Query: 121 tgagtttctggaacagcgcatgtaaaagtcatggggcagatctcacgtatgcatctgttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgagtttctggaacagcgcatgtaaaagtcatggggcagatctcacgtatgcatctgttg 380

                                                               
Query: 181 tctctgcaattcgtcttcttgggtttaggttcccttccaaaggccgtgtcta 232
           |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctctgcaatccgtcttcttgggtttaggttcccttccaaaggccgtgtcta 432


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 632
Length adjustment: 9
Effective length of query: 223
Effective length of database: 623
Effective search space:   138929
Effective search space used:   138929
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)