BAC Information

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BAC

Clone NameMSMg01-291D18
Chromosome17 (Build37)
Map Location 81,795,630 - 81,795,927
singlet/doubletsinglet
Overlap geneSlc8a1
Upstream geneSos1, Cdkl4, F420015M19Rik, Map4k3, LOC100043697, C230072F16Rik, LOC675572, EG668830, Tmem178, Thumpd2, LOC100043700, LOC100043704
Downstream geneEG668832, LOC100043707, LOC625467, LOC668836, EG433141
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-291D18.T7 (MSMg01no291_d18.b1)MSMg01-291D18.TJ (MSMg01no291_d18.g1)
ACCAG420291AG420292
length728727
length of high quality
(start - end)
298 (431 - 728)239 (128 - 366)
definitionCHROMAT_FILE: MSMg01no291_d18.b1 PHD_FILE: MSMg01no291_d18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:58 2005CHROMAT_FILE: MSMg01no291_d18.g1 PHD_FILE: MSMg01no291_d18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATTCAAACTGCATTTGTACTCTTATAGACTCCATGTTATTAACTT
TTATAATAAAAGTAATATTTTCCCACTTCAAATATAGAATTATCAGAACC
CGGGCGCTATTTTAAAAACAGGCTTACCCATGTTTGCTTCTGGATATTGT
AGAGAGGGAGAACATAAATATAACCCAAGAAAAGCCAGAAACCTAGAACT
GAACAATAACTTTAAAGTCAGTTACAACTCTGTTAATGATTTGGAGCAGT
GGCTCTCAGCTTCCCTAATGCTGTGACTCTTTAATACGGTTCCTCGTGTT
GTGGAGATGCCCTTTCTTAACATTATTCTCACTTCCTGCTTCATAACTGT
AATGTTACTACTGTTGCCCCCACAATAGTGCAAATATCTCTTTTCTGGTG
GTCTTGGGTGACCCTTGTGAAGGGTCATCTGACCCCCCAAAAGGTCGTGA
CCCGCAGATTAAGAACTGTTCTAGAAGGATGGAGGGCAGTCAATAAGACC
AGCTGGCTTTTAGCCTCTCTCCAGCCCTCTTCAATAGACTGTTTTACTTA
AGAAGTCAAGCTGCTACTTCTGTAGAAAATGATTTCATTCATTTTATTCA
CTTGTGCAGCCATCTTAACATGGCGTTGTTACAGTTGGTTGCAAACATCT
TTGTAGTCGTCCCAACAACTGGTGATGA
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTCCCTTCTGACAGACAAGAAACTG
GAGCTCAGAGGTCAAAGGTTAGCTCAAGAGAGCCCAACCTGAGAACCCAA
GTCTCACTTACCTGGTACAGGAATGTTAAAAATGATCTTTCTTTCTTTTT
CTTTTTCTTTTTCTTTTTCTTTTTCTTTTTTTCTTTTTCTTTTTCTTTTT
CTTTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTTCT
TTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTT
TTCTTTTTCTTTTTTTTTTTCTTTCCCCCCCCCCCCTTTTCTTTTTCTTT
TTCTTTTTCTTTTTCTTCCCCCCTTTCAAAAAAACTATCTTTCTTTCTTT
CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT
TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTCCTTCCTTCCTTCCTTC
CTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTTCT
TTCCTTTCTTTCCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCC
TTCTTTCTCTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCATTCTTTCTTT
CTTCCTTTCCCCCTTTCTTCCTTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no291_d18.b1 MSMg01no291_d18.b1 CHROMAT_FILE:
MSMg01no291_d18.b1 PHD_FILE: MSMg01no291_d18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:58 2005
         (298 letters)



>mm_chr17_81795430_81796127
          Length = 698

 Score =  538 bits (278), Expect = e-157
 Identities = 293/298 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaatatctcttttctggtggtcttgggtgacccttgtgaagggtcatctgaccccccaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 caaatatctcttttctggtggtcttgggtgacccttgtgaagggtcatctgaccccccaa 439

                                                                       
Query: 61  aaggtcgtgacccgcagattaagaactgttctagaaggatggagggcagtcaataagacc 120
           ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| | |
Sbjct: 438 aaggtcgtgacccgcagattaagaactgttctagaaggatggaggtcagtccataaaagc 379

                                                                       
Query: 121 agctggcttttagcctctctccagccctcttcaatagactgttttacttaagaagtcaag 180
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 378 agctggcttttagcctctctccagccctcttcaaaagactgttttacttaagaagtcaag 319

                                                                       
Query: 181 ctgctacttctgtagaaaatgatttcattcattttattcacttgtgcagccatcttaaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ctgctacttctgtagaaaatgatttcattcattttattcacttgtgcagccatcttaaca 259

                                                                     
Query: 241 tggcgttgttacagttggttgcaaacatctttgtagtcgtcccaacaactggtgatga 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 tggcgttgttacagttggttgcaaacatctttgtagtcgtcccaacaactggtgatga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 298
Length of database: 698
Length adjustment: 9
Effective length of query: 289
Effective length of database: 689
Effective search space:   199121
Effective search space used:   199121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)