BAC Information

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BAC

Clone NameMSMg01-291K20
Chromosome17 (Build37)
Map Location 11,834,512 - 11,995,063
singlet/doubletdoublet
Overlap genePark2
Upstream genePacrg, LOC100041113
Downstream geneAgpat4, Tdgf1-ps2, Map3k4, 4732491K20Rik, LOC625753, Plg, Slc22a3, LOC100041192, Slc22a2, Slc22a1, Igf2r, Air
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-291K20.T7 (MSMg01no291_k20.b1)MSMg01-291K20.TJ (MSMg01no291_k20.g1)
ACCAG420609AG420610
length748749
length of high quality
(start - end)
184 (134 - 317)186 (131 - 316)
definitionCHROMAT_FILE: MSMg01no291_k20.b1 PHD_FILE: MSMg01no291_k20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:26:32 2005CHROMAT_FILE: MSMg01no291_k20.g1 PHD_FILE: MSMg01no291_k20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:26:32 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,834,512 - 11,834,694)(11,994,882 - 11,995,063)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCANAAAGAATCCGCGGAANT
CAGNAGCTTTCCAACAACAAACGGAGACCAAGACTATCACTGCATTAGCC
TGTTCATTCAGTTTTCAACCCAACATAGAGGCAAGAACTCACTACTCCAA
AATGGCAATAGGATGGNCATGGCACCCCTGGAGGAAAAACCCATATTGCA
AGGAAAACCAACCACCACATCCAGTCTCCACAGTCCACCAGGGTCCTAAT
TGTCTTTGCCCACAGCTGTGTAGCATGGGACAGATGTTTCTGGTCCTTTT
GAGGTGCTGAGTTAATTTTTTTTTCTACAGAAATGAAGAAGCCTGGGTTT
CAGATTTTTTTTTTTCCCCCCCCCCCCCCCGGANAAAANTGAAAAAAAAA
TGTTTTCTGGCCCCCCCCCAAAATTCACCAAGATAGATGGGGGGGGGGGA
TGAAATCAATATGATTCCTAGAATCACACTGGAAAATTAGAGCAGCTCAC
CAACCAACCAAACAAACAAATCATTTTTTTCCTCTCTTATTTTTAACCAA
AACCAGTAAATGCTCTTTCTGCCTTGGACATGAGCCAAAAGATTCTAAGC
TTCTCAAATCACTACCCTTCCTGGTTTATCTCTTGAGTAATTCACCTGAT
TTGTTGTTCTTTTTTTTATTTACAATCCTATGAAGCATAAAGTGGGGCTA
CTCTACTTCCCATAACTTACCCTACCCTCAAAACCCATGGCTTGTTAA
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXCCAAAATATCTCAGGGNGAATTGAAACTTGTGGGGACAGG
GGGAAACCAGGTTCAGACAACAAAAGAGACACAGGACCAAGGAATGGATG
GAATTCTTTCACCTGAACCCCATAAAGTGGCTGATACTTAACACAGTGTG
GGCAAGAGCTCCACAGTGACCTATCTGTCACCTGACACCTGACATATGTT
TCAGAGATCATCAGGCAGGGACCTATGTCATCTCCTAGGACTTCAGCTCA
GCTTGGCCCATATTTGTTGTTTTGGCCGATTTGAGNGCTGNCTATCTACC
CATTTTTTTTTTTGCCCCCCCCCCCCCCCTGCTGTTCAGCAGTGGATTCT
CTGTGTCCCCCCCCCCAAACAATACAAAAACAACATAGGCGGGTGGGTAT
GTTCCACCAGCTCACTTCTGAAGTTTTCTATAACTATGCGGTAGTTCTGC
AACTTGCATTTACTCTGTAATGCACATACTAATGCATATACACACACATA
CATATACACATACATACACATACATACATACACACATACCCATGCTCTCA
CATACATACTCACACATACTCATATACACATACATACTCACCTTCCACAC
ACTTTTTTTTTTTTTTTCACTGCACTCACCATATGAAAGTTAATATTACC
AACTAGTATTGATATCTCTCAACCCATTATTGCCTCCCCCCCATTGCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no291_k20.b1 MSMg01no291_k20.b1 CHROMAT_FILE:
MSMg01no291_k20.b1 PHD_FILE: MSMg01no291_k20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:26:32 2005
         (184 letters)



>mm_chr17_11834312_11834895
          Length = 584

 Score =  333 bits (172), Expect = 5e-96
 Identities = 180/183 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaactcactactccaaaatggcaataggatggncatggcacccctggaggaaaaaccca 60
           ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct: 201 agaactcactactccaaaatggcaataggatggtcatgtcacccctggaggaaaaaccca 260

                                                                       
Query: 61  tattgcaaggaaaaccaaccaccacatccagtctccacagtccaccagggtcctaattgt 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 261 tattgcaaggaaaaccaaccaccacatccagtctccacagtccaccagggtcctaagtgt 320

                                                                       
Query: 121 ctttgcccacagctgtgtagcatgggacagatgtttctggtccttttgaggtgctgagtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctttgcccacagctgtgtagcatgggacagatgtttctggtccttttgaggtgctgagtt 380

              
Query: 181 aat 183
           |||
Sbjct: 381 aat 383


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 184
Length of database: 584
Length adjustment: 8
Effective length of query: 176
Effective length of database: 576
Effective search space:   101376
Effective search space used:   101376
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no291_k20.g1 MSMg01no291_k20.g1 CHROMAT_FILE:
MSMg01no291_k20.g1 PHD_FILE: MSMg01no291_k20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:26:32 2005
         (186 letters)



>mm_chr17_11994682_11995267
          Length = 586

 Score =  329 bits (170), Expect = 7e-95
 Identities = 179/182 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   acaggaccaaggaatggatggaattctttcacctgaaccccataaagtggctgatactta 60
           |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 382 acaggaccaaggaatggatgtaattctttcacctgaaccccataaagtggttgatactta 323

                                                                       
Query: 61  acacagtgtgggcaagagctccacagtgacctatctgtcacctgacacctgacatatgtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 322 acacagtgtgggcaagagctccacagtgacctatctgtcacctgacacctgacatatgta 263

                                                                       
Query: 121 tcagagatcatcaggcagggacctatgtcatctcctaggacttcagctcagcttggccca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tcagagatcatcaggcagggacctatgtcatctcctaggacttcagctcagcttggccca 203

             
Query: 181 ta 182
           ||
Sbjct: 202 ta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 186
Length of database: 586
Length adjustment: 8
Effective length of query: 178
Effective length of database: 578
Effective search space:   102884
Effective search space used:   102884
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)