BAC Information

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BAC

Clone NameMSMg01-292A17
Chromosome17 (Build37)
Map Location 11,834,113 - 11,834,429
singlet/doubletsinglet
Overlap genePark2
Upstream genePacrg, LOC100041113
Downstream geneAgpat4, Tdgf1-ps2, Map3k4, 4732491K20Rik, LOC625753, Plg, Slc22a3, LOC100041192, Slc22a2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-292A17.T7 (MSMg01no292_a17.b1)MSMg01-292A17.TJ (MSMg01no292_a17.g1)
ACCAG420876AG420877
length774769
length of high quality
(start - end)		321 (46 - 366)291 (77 - 367)
definitionCHROMAT_FILE: MSMg01no292_a17.b1 PHD_FILE: MSMg01no292_a17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:26:59 2005CHROMAT_FILE: MSMg01no292_a17.g1 PHD_FILE: MSMg01no292_a17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:26:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCTATGATGGCTGAAGCAGAAGGCCATAGGATTCCAGCTCCCATT
CCCTCCGACTCTCCAGTATGGGCCAGTAGCAATGGGAGATTCTCCTATGT
TCAGGTGGCAGGTTTATTGAAGGAGGAGCTCTATAACAGATCTTCCTTGA
GGTTGTCTTCCATGATAGGGTTGATTCATAAAGAATGGCTGCTTGCGGGT
AACCCATGTTTCTCTAAATAACCCCACCACCACCACCACCCATACTCAGT
ACACAATCCCAATAGATTCATTGTTTCACGAGGTCAGACTTCAGTGGACT
CTTTCCTTTGGCCTGTCGTCTGTGCTCTATCGCGAGTTTGCATCTCCCCA
GGAAAAGTTCTTTCCCCCCCCCTCATGTCACTTTGGGGGGTGGGGACTGA
GAGAAACATTGATGTGACTGTTCCTAGAGAGGATGAATGAAGGGTTTCCT
ACTCCACTCTCATTTTCTAATCCATACCTGCCACTCGTATATCATTCTAA
GATTCTATTTATTCCTTTTTCTCTCCGTTATTTATCTCTCTCCATCTCTT
TGTTTGACATCACAGCAAACGTCGTCTGTTTTCTCTTTATTATATTGACA
CACAATTTCTTCTTCTTTTGTTTTCTCCTTTTTTCTCACCGCTTGTTCTT
TGTTTTTTACCTTTCACTGGTTTATTCATTCTTATTGTTAAATTATTCCC
CATTTTTACTGTGGTTTTCGTTTC

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAAACAATTATCAATAAGATGGAT
GTAATGAATATCTTTAGACCAATACAGCTCACAACAGATTACAGGATCTC
TTCAAGGTAAGATGAGAGCATTCATTCTATCCCATAAAATAGACCTTAAC
AGTTCTTGAAAGAAGGAAAACTGTGTAATCTCTCAGATCTCAGTGTAAAT
GAATTAAAAATAAACAATAGAAAGGCAAATGGAAAAACTCTAACATATTT
GGAAATTAAATAAGAAAGTTCTAAATAAGGTGTGGGACCAGAAAGATCTC
AAGAGTAACTTTGATTTTTTTGAACCCCCCACCCCCCATTTCATTGTTTG
TGGATATAACCAAAGCCCCCCCCGCAGGAAAAAGAATAGTACTGAAGTAG
GTGTTAGAATAAAACAAAGACTTAACTCACAAGGCCATATTTCTCCCCAA
GAAACTAGAAATGGAAGAAAAAAATTAAACTCAAAATCAGAAGAGAAACT
TTAGAACAGAAATCATTACTACTGAAGAGTTATTAGATGAACGTTAATGA
TATAACTATTTAGTAGGTCTTTATCCTAACAACAAATGGGAGTAACCCAC
GATACATCTTATTTTATTCTATTACTTGGTTCGTTATGACTCTTGCGCCT
TTTTATTGTTTTATTGTTTTTTGTCGCCCTCCCCCACCTTTTCTTCGCCT
CTTTCTGGCTTTTGTTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no292_a17.b1 MSMg01no292_a17.b1 CHROMAT_FILE:
MSMg01no292_a17.b1 PHD_FILE: MSMg01no292_a17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:26:59 2005
         (321 letters)



>mm_chr17_11833909_11834629
          Length = 721

 Score =  574 bits (297), Expect = e-168
 Identities = 312/317 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctatgatggctgaagcagaaggccataggattccagctcccattccctccgac 64
           ||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 gaattctctataaagggtgaagcagaaggccataggattccagctcccattccctccgac 462

                                                                       
Query: 65  tctccagtatgggccagtagcaatgggagattctcctatgttcaggtggcaggtttattg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 tctccagtatgggccagtagcaatgggagattctcctatgttcaggtggcaggtttattg 402

                                                                       
Query: 125 aaggaggagctctataacagatcttccttgaggttgtcttccatgatagggttgattcat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 aaggaggagctctataacagatcttccttgaggttgtcttccatgatagggttgattcat 342

                                                                       
Query: 185 aaagaatggctgcttgcgggtaacccatgtttctctaaataaccccaccaccaccaccac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 aaagaatggctgcttgcgggtaacccatgtttctctaaataaccccaccaccaccaccac 282

                                                                       
Query: 245 ccatactcagtacacaatcccaatagattcattgtttcacgaggtcagacttcagtggac 304
           ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct: 281 ccatactcagtacacaaccccaatagattcattggttcacgaggtcagacttcagtggac 222

                            
Query: 305 tctttcctttggcctgt 321
           |||||||||||||||||
Sbjct: 221 tctttcctttggcctgt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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