Query= MSMg01no292_h04.b1 MSMg01no292_h04.b1 CHROMAT_FILE:
MSMg01no292_h04.b1 PHD_FILE: MSMg01no292_h04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:27:31 2005
(531 letters)
>mm_chr17_61220592_61221521
Length = 930
Score = 913 bits (472), Expect = 0.0
Identities = 500/510 (98%), Gaps = 3/510 (0%)
Strand = Plus / Plus
Query: 22 caagctaccagaagatggaagccaagggaacacacaggaagactcatgtcgtatagacct 81
||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
Sbjct: 222 caagctaccagaagatggaagccaaaggaacacacaggaagactcatgttgtatagacat 281
Query: 82 ccttccttcagacatctggtctctgggccatttgggaaaaaaaatcagtctttaaattaa 141
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 282 ccttccttcagacatctggtctctgggccatttgggaaaaaaa-tcagtctttaaattaa 340
Query: 142 tgatatcttgttagagcagcaaagaggaaaataagacagaatatataggctcccatgcag 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 tgatatcttgttagagcagcaaagaggaaaataagacagaatatataggctcccatgcag 400
Query: 202 ttacacataggcacctatgcagccacacagcttagtggctttttttttt--aattagata 259
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 401 ttacacataggcacctatgcagccacacagcttagtggcttttttttttttaattagata 460
Query: 260 gtttctttatttacatttcaaatgttatcccctttcctggttcccctccgaaaacccaac 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 gtttctttatttacatttcaaatgttatcccctttcctggttcccctccgaaaacccaac 520
Query: 320 tattccatcgccatgcccctgctcactaagccacccactcctgcctccccaccccgccat 379
||||||||||||||||||||||||||||||||||||||||||||||||| | || | |||
Sbjct: 521 tattccatcgccatgcccctgctcactaagccacccactcctgcctccctatcctggcat 580
Query: 380 ttccctatactggggtattgagccttctcaggcccaagggcctctcctgatgtcccacaa 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 ttccctatactggggtattgagccttctcaggcccaagggcctctcctgatgtcccacaa 640
Query: 440 gtccatcttctgttacatatgtggctggaacattaagtatctccatgtgtacgctttggt 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 gtccatcttctgttacatatgtggctggaacattaagtatctccatgtgtacgctttggt 700
Query: 500 tgttggtttagtccctgggagctctgcagg 529
||||||||||||||||||||||||||||||
Sbjct: 701 tgttggtttagtccctgggagctctgcagg 730
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 930
Length adjustment: 10
Effective length of query: 521
Effective length of database: 920
Effective search space: 479320
Effective search space used: 479320
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no292_h04.g1 MSMg01no292_h04.g1 CHROMAT_FILE:
MSMg01no292_h04.g1 PHD_FILE: MSMg01no292_h04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:27:31 2005
(273 letters)
>mm_chr17_61393417_61394089
Length = 673
Score = 462 bits (239), Expect = e-135
Identities = 263/271 (97%), Gaps = 1/271 (0%)
Strand = Plus / Minus
Query: 1 tttttaaccttgtggaaaattaaacaaaacaaggaacttttttaaaaaagacaatggtac 60
|||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||||||
Sbjct: 612 tttttaaccttgtggaaaataaaacaaaacaaggaactttttaaaaaaagaaaatggtac 553
Query: 61 ggtttacagttgtaactttttgtgggttgtctgtggggtggggcgcttgcttgattatta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 ggtttacagttgtaactttttgtgggttgtctgtggggtggggcgcttgcttgattatta 493
Query: 121 ttattttttttttttaatatttgtttggtttgcttggttgtttaaagtgaaagagaaaga 180
| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 492 -tgttttttttttttaatatttgtttggtttgctttgttgtttaaagtgaaagagaaaga 434
Query: 181 aaggctgtgttaggttgtcagatgggaagtatctgggaaacattaggagaggaaaaagga 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 433 aaggctgtgttaggttgtcagatgggaagtatctgggaaacattaggagaggaaaatgga 374
Query: 241 acgtcagaatatactggttttttgggttttt 271
|||||||||||||||| ||||||||||||||
Sbjct: 373 acgtcagaatatactgtttttttgggttttt 343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 673
Length adjustment: 9
Effective length of query: 264
Effective length of database: 664
Effective search space: 175296
Effective search space used: 175296
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
