BAC Information

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BAC

Clone NameMSMg01-292L14
Chromosome17 (Build37)
Map Location 40,621,280 - 40,621,577
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043300, EG668200, LOC672857, LOC627695, LOC634967, Pgk2, Crisp3, Crisp1, LOC668229
Downstream geneLOC100043756, EG433107, EG619517, Crisp2, Rhag, 9130008F23Rik, EG435528, Cenpq, Mut, Ldha-ps3, LOC627577
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-292L14.T7 (MSMg01no292_l14.b1)MSMg01-292L14.TJ (MSMg01no292_l14.g1)
ACCAG421367AG421368
length740753
length of high quality
(start - end)		491 (45 - 535)298 (76 - 373)
definitionCHROMAT_FILE: MSMg01no292_l14.b1 PHD_FILE: MSMg01no292_l14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:52 2005CHROMAT_FILE: MSMg01no292_l14.g1 PHD_FILE: MSMg01no292_l14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTGTTTACCTCTGAGCCTCATTTTTTAATGGGATTATTTGATTTT
CTAGAGCCCAGCTTCTTGAGTTCTTTATATATATTGGATATTAGTCCCTC
GGGGATCCATCCCATAATTGGCCTCCAAACGGTGACACCATTGCATATGC
TAGCAAGATTTTGCTGAAAATATACTCTGATATAGCTGTCTCTTGTGAGG
CTAAGCTGGGGCCTAGCAAACACAGAAGTGGATGCTCACAGTCAGCTATT
GGATGGATCAGAGGGCCCCCAATGGAGGAGCTAGAGAAAGTACCCAAGGA
GCTAAAGAGATCTGCAACCCTATAGGTGAAACAACAATGTGAACTAACCA
GTACCCCCGGAGCTAGTGTCTCTAGCTGCATATGTATCAGAAGATGGCCT
AGTCGGCCATCAGTGGAAAGACAGGCCCATTGGTCTTGCAAACTTTATAT
GCCTCAGTGCAGGGGAATACCAGGGCCAAGAAGTGGGAGTGTTTGTTTAG
CGCATTTATCCATTTTTTTACCATTCCTTGACTTTTATTTATCTTTCTCC
CCTCTCCTTTCCTCTCTAATTCTATTCCCTCTCCTCTTCCCGCTCCCCTT
TTTTCCTCTTTTCCCTTCTTTCCTCCACTCTTTATTTTTCCCCGTCTCTT
TTCCCCTTCTTCACCTTCGACCTCCTAACTCTCTCTCTCT

CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGGAGAGTCCCCCCAACCTCCTATT
AAAAAAAAAACCTACAGAATAAAACAGCAATTCAGTAGAGGGAGTTGGAG
CTTATACATATTTTGTAAATGTAATTTAAATATCATAAAAATATAGAAAA
TAAATGAAATGTTCTCAATGACATAAGAAATATATTTATATAATTGGGTT
ATTTAAAATCAATATTTAAGAGTTCTTGCTGAATTTAAAAGAAATTTGGC
AAACCTCAAAAATCTAAATGCTTCTTATTTTGATAGGTTGTTCTATTATA
TGATCTTGCTTTAGCTTGGTATGTTTTTCTAAGGTTGAGGATTCAACCTC
AGAATGCCAACAAACCCACATTCCATTTTTATTTCATTCAGGTTCTTACC
TCATTTTTTTTCTTCCAGATTTGATTCAATATCCCATGTAACATTTAACT
GTCAGTACTTAGTCTCTAGTTGCTTGCAGTTGTTTCTCAGATTTCTTTGG
TTTTCATGTGTTAGTGTTTTCTCAGAATTTACATCCTTAAGTTTTATTTT
AAAGACCAACCCTTCGATGATGAATTATTTTTTGCGCTTATATTCACACT
ATCCTTACTCCTGCTTTATAACTATTTGGAATTATTGTCATTTTCTAGCA
TGCCTTTTCGTCCCTTCCTTTCCAGCACCCTTCAATCGTTCCTGTTTTCC
GCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no292_l14.g1 MSMg01no292_l14.g1 CHROMAT_FILE:
MSMg01no292_l14.g1 PHD_FILE: MSMg01no292_l14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:27:52 2005
         (298 letters)



>mm_chr17_40621080_40621777
          Length = 698

 Score =  561 bits (290), Expect = e-164
 Identities = 296/298 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggagagtccccccaacctcctattaaaaaaaaaacctacagaataaaacagcaattcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 tggagagtccccccaacctcctattaaaaaaaaaacctacagaataaaacagcaattcag 439

                                                                       
Query: 61  tagagggagttggagcttatacatattttgtaaatgtaatttaaatatcataaaaatata 120
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 438 tagagggagttggagcttatacatattttgtaaatgtaatttaaatatcacaaaaatata 379

                                                                       
Query: 121 gaaaataaatgaaatgttctcaatgacataagaaatatatttatataattgggttattta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 gaaaataaatgaaatgttctcaatgacataagaaatatatttatataattgggttattta 319

                                                                       
Query: 181 aaatcaatatttaagagttcttgctgaatttaaaagaaatttggcaaacctcaaaaatct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 aaatcaatatttaagagttcttgctgaatttaaaagaaatttggcaaacctcaaaaatct 259

                                                                     
Query: 241 aaatgcttcttattttgataggttgttctattatatgatcttgctttagcttggtatg 298
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 258 aaatgcttcttattttgataggttgttatattatatgatcttgctttagcttggtatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 298
Length of database: 698
Length adjustment: 9
Effective length of query: 289
Effective length of database: 689
Effective search space:   199121
Effective search space used:   199121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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