BAC Information

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BAC

Clone NameMSMg01-292P11
Chromosome17 (Build37)
Map Location 42,748,087 - 42,748,423
singlet/doubletsinglet
Overlap geneOpn5
Upstream geneLOC627626
Downstream geneGpr115, Gpr111, EG546797, Cd2ap, Tnfrsf21, LOC100043770, Gpr110, Gpr116, Mep1a, LOC100043332, Pla2g7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-292P11.T7 (MSMg01no292_p11.b1)MSMg01-292P11.TJ (MSMg01no292_p11.g1)
ACCAG421541AG421542
length799769
length of high quality
(start - end)		263 (46 - 308)339 (77 - 415)
definitionCHROMAT_FILE: MSMg01no292_p11.b1 PHD_FILE: MSMg01no292_p11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:28:12 2005CHROMAT_FILE: MSMg01no292_p11.g1 PHD_FILE: MSMg01no292_p11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:28:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAAGAGAGACTCCCGGATTGATGATGTAGCAGCAGCAAGAGGCCT
TAAACCAGAAAACCAATCTGTCGTAGTGAACATTTGCAAGTAAAAATGCG
TCGACATTAAGGATCACATTGTGATACACTACAGCTTTTTGTTTGTTTGT
TTTCTTTTGTGAGGCAGGTCACAAGGGTAGAGGGCAGAAATGAAGGGATT
AGGAGATGAGTGGAATTGGGATACATGATGGTGAAATTCACAAGCAATCA
ATTACAAAGTTAAAAAAGTTTTTTAGTACGCATACTATGCCATGATGAGC
AAGTCAGTTTTTTTTACCCCTCTACGCCCTCTGCATCAGCTCCTGTCTCT
TGTTTTTTGTTTTCCCCCCCCCCACCAACAAAAATGATAATGAGACGTGT
TCCTCCCATCCAAGAAAACCCTCAACCTCATCTTCCTCAATTCTCCTCTT
ACCAAATTTTTCTTCTTTTCTATCTCTCCTCCCTATCCTTTCTCCATTCC
TTTCATTTACCTAATTATTTCCCTCACCCCTTCTTTTACTCAATACTTTT
CTTTCCACTCTTACTCTCTACTTTTTTCTTTTATACATCCTACTTATATA
CTCACCCCCCGCATTTTCTACCTTTTTTTATTCCTACTTCCTTATACCTT
ACCTTTTCAATATCTCTAATTTTTTCTTTACCTTTTCATACTTACCCACT
TCTCTCCTTTCCCTACCTTTTTAATCCTTCTCTCCCTTTATTTCCTTTC

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTCAATGCAGCCTCTGACACAGA
AGCATTAAGGAAGCTTACCGATTATTGTTAGGTAAAAGCCAGCCACTAAA
TCCGCTTCCCAGGAAAGTTTGGAAGCAAAGGGGTCCTCGTCTCGAAGATA
GTGGGGCAGGCGCTCATCCTGAGGTAGGGCAGTGTGGTTCAAGGCCATGC
TGGTCTCACACCCCCCAGGAGTCTGTGAAGCAAATCAGCAGAGATCTCAA
CAGACGGAATAACAAGTCCGTGAATCCGCTCACAAATGCATCTCTTTCCA
TAAAACAAAAGGTATACTCCAGGGTCCCACAGGTGATTGGTACCTAGTGG
AGTGATGTTCACCCCCCCCCCTGTTTTGTTTTGTTTTTTTCTTAAATGAC
GTAAATACACCAACACACAGTTGTTCAATTTGCAGTCTAGACAAGCCTGC
ATCTTCTCCTCAGGCTGCCTCTGCAGCTTTTCACACCTCCCCCAGTGAAT
AAAAGGTTGAAAACTAGTTTGTCCTATTGCTCCCTAGCAAACTTTGTAGA
GCTCTGACGTAAGAAAACCCACAGTGAGAAATGTGGACACTGCACACTGA
CTTGCCAGACCACAGCATCCCAAGATAGCCCAAGCTTTCTCCTTTCTTAA
CAGGCATGGTGAGCTAATGAAAGAAAGAGGGTTCAGGTTCCCCCGATCTG
GACCCCTCTTGTAATGGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no292_p11.g1 MSMg01no292_p11.g1 CHROMAT_FILE:
MSMg01no292_p11.g1 PHD_FILE: MSMg01no292_p11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:28:12 2005
         (339 letters)



>mm_chr17_42747887_42748625
          Length = 739

 Score =  621 bits (321), Expect = 0.0
 Identities = 333/337 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctcaatgcagcctctgacacagaagcattaaggaagcttaccgattattgttaggtaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctcaatgcagcctctgacacagaagcattaaggaagcttaccgattattgttaggtaaa 260

                                                                       
Query: 61  agccagccactaaatccgcttcccaggaaagtttggaagcaaaggggtcctcgtctcgaa 120
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 261 agccagccactaaatccgcttcccaggaaagtttggaagcaaaagggtcctcgtctcgaa 320

                                                                       
Query: 121 gatagtggggcaggcgctcatcctgaggtagggcagtgtggttcaaggccatgctggtct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatagtggggcaggcgctcatcctgaggtagggcagtgtggttcaaggccatgctggtct 380

                                                                       
Query: 181 cacaccccccaggagtctgtgaagcaaatcagcagagatctcaacagacggaataacaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cacaccccccaggagtctgtgaagcaaatcagcagagatctcaacagacggaataacaag 440

                                                                       
Query: 241 tccgtgaatccgctcacaaatgcatctctttccataaaacaaaaggtatactccagggtc 300
           |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 441 tccgtgaatccgctcacaaatgcatctctttccataaaacaaaaggcaaactccagggtc 500

                                                
Query: 301 ccacaggtgattggtacctagtggagtgatgttcacc 337
           |||||||||||||||||||||||||| ||||||||||
Sbjct: 501 ccacaggtgattggtacctagtggagagatgttcacc 537


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 739
Length adjustment: 9
Effective length of query: 330
Effective length of database: 730
Effective search space:   240900
Effective search space used:   240900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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