BAC Information

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BAC

Clone NameMSMg01-293C19
Chromosome17 (Build37)
Map Location 25,127,906 - 25,128,197
singlet/doubletsinglet
Overlap geneCramp1l
Upstream genePrss22, LOC100042414, LOC383225, Prss27, Kctd5, Pdpk1, Amdhd2, Atp6v0c, Tbc1d24, Ntn2l, 1600002H07Rik, Ccnf, Abca17, Abca3, Rnps1, Dci, Dnase1l2, E4f1, 1700012G19Rik, Gbl, 9930021D14Rik, LOC666299, Caskin1, Traf7, Rab26, Pkd1, Tsc2, Nthl1, Slc9a3r2, Npw, Zfp598, Syngr3, Gfer, Noxo1, Tbl3, Rnf151, Rps2, Snora64, Ndufb10, Rpl3l, Sepx1, Hs3st6, 4930528F23Rik, Fahd1, Hagh, Igfals, Nubp2, Spsb3, Mrps34, Nme3, Mapk8ip3, Hn1l
Downstream geneIft140, BC054438, Telo2, 1110018H23Rik, Clcn7, Gm317, BC003965, Unkl, Gnptg, 0610007P22Rik, Ube2i, Prss34, Prss28, Prss29, LOC432543, LOC666472, Tpsab1, Mcpt6, Tpsg1, Cacna1h, Tekt4, Sstr5, LOC100042580, Sox8, Tmem112, LOC545396, Gng13, Chtf18, Rpusd1, BC052484, Msln, Narfl, Haghl, Ccdc78, BC008155, Metrn, Fbxl16, Wdr24, 2610003J06Rik, Stub1, Rhbdl1, Rhot2, Wdr90, 9530058B02Rik, 0610011F06Rik, Wfikkn1, Rab40c, LOC100043160, Pigq, F430201B04Rik, D630044L22Rik, Solh, 1700022N22Rik, Rab11fip3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-293C19.T7 (MSMg01no293_c19.b1)MSMg01-293C19.TJ (MSMg01no293_c19.g1)
ACCAG421693AG421694
length740771
length of high quality
(start - end)		292 (60 - 351)223 (64 - 286)
definitionCHROMAT_FILE: MSMg01no293_c19.b1 PHD_FILE: MSMg01no293_c19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:28:29 2005CHROMAT_FILE: MSMg01no293_c19.g1 PHD_FILE: MSMg01no293_c19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:28:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCCGCTAAACGACTCCTATATTCAGAGGATCCGCGGAATTCTCTTGTGAT
TTCCCTGTCTCTGGAGTTGGTAATAAGTTAGTAAGATATTGTTGTCCTGA
GCTTCTCCCCACTTCCAAACCCACCTTGTGGTGCTCTCTTGGCTTCCCCA
AAACATATTTTACTCTGCTATACCTTTTCTTGTGGCTCCAAAGACTTCTG
TCAATTTTCCTGGTAGAGATCGGCCTTCTTGTCCATACCTTGGATATAAA
CTTCATTGACTGGAAGTCCGAGTCTTGCTGAGTGTCTTACTCTGCACCTT
CACTTGGCTAATGGTTGAATGCTTAGCTATACCTCTGTCCTCTGTCTCAT
CTTTTCTACCCTCCGCCCTGCCGTGTCACACTGCTACTGATGCTGCTGTT
TACAACGCTCTGCTACATTGCAAGGCCCATTTCTGCCACTTCTGTTAGGC
ATTTTGTGGAGAACTTCTTTTTGTTTTGTTTTGTTTAGGGCCCTTGATGA
AAGCTGCTGTGTCCTCTTTCTCATTCCTTGCCCTCAACCCCCCAGGCCAA
TCCCTGACCCTTGAACATTTGGTCTGCTTTGTCATTCAGACTCTTGTAGC
TACTGTGGACATAACAGTCTTTATATCTTTTGAGATACAGCCTTCCCAAA
TGCCTAATACTGTTCTCTTGCTTCTCTCTCATAGGCCTGAACTTTGGCGT
TTAGATGACTTAATGCTTGTTGAAACGAGGGCCTAAGTTN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTTCTTGGAATATTTATCTTTTTTTTTAAAAAGATTT
ATTTATTTATTTATTTATTTATTTATTTATCTATTTTATGTATATGAGTA
CACTGTAGCTGCACAGATGGTTGTGAGCCTTCATATGGTTGTTGGAAATT
TAATTTTTTTTCGGACCTCTGCTCACTCTGGTCAACTCTGCTCGCTCATT
CCCTGCTTGCTCTGGCCCAAAGATTTATTTACTACTATTCATAAGTACAC
TGTATCTGTCTCCTCTCATACCATAAAAGTGTGTAATATCTCATTACAGA
TGTTCNATGATTTCCCCCCCCCCCCCCCCTAGATTTGAACTCATGTTCTC
TGTAACACTACCCCCTGCTCTAATAAAAAGAAATCATCTTCCTAGGCTAT
AACATTCATCTTTCCCATAATTACCTACCTTATATTTTTTACAATCTCAA
CAAGCTAATTTTTTCTTGCGATCTTGTTTACTGTTAACTCTATTTGTCTT
CCACGTCTTCTTATTCCTTGTGTGTCTCATTTCCTTTACTCTTTCCGTCT
CTCTCTTTTCCTCCTAATTTTGACCCCATTGTTTACCTTTTCACCCCTCC
CGCCATTATGTGTGGCCATGGCCACTAATTTATGCTGTTTTTCTCCCCTA
ACTTTCCTCCTTCCCTCTTCCTTTTTCTCACCCCTGCTCTTGTTTTGTGC
ATCTGTGTCATTGTTACCACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no293_c19.b1 MSMg01no293_c19.b1 CHROMAT_FILE:
MSMg01no293_c19.b1 PHD_FILE: MSMg01no293_c19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:28:29 2005
         (292 letters)



>mm_chr17_25127706_25128397
          Length = 692

 Score =  549 bits (284), Expect = e-161
 Identities = 290/292 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctggagttggtaataagttagtaagatattgttgtcctgagcttctccccacttccaaa 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 492 tctggagttggtaataagttagtaagatattgttgtcctgagcttctccccagttccaaa 433

                                                                       
Query: 61  cccaccttgtggtgctctcttggcttccccaaaacatattttactctgctataccttttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 cccaccttgtggtgctctcttggcttccccaaaacatattttactctgctataccttttc 373

                                                                       
Query: 121 ttgtggctccaaagacttctgtcaattttcctggtagagatcggccttcttgtccatacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ttgtggctccaaagacttctgtcaattttcctggtagagatcggccttcttgtccatacc 313

                                                                       
Query: 181 ttggatataaacttcattgactggaagtccgagtcttgctgagtgtcttactctgcacct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 ttggatataaacttcattgactggaagtccgagtcttgctgagtgtcttactctgcacct 253

                                                               
Query: 241 tcacttggctaatggttgaatgcttagctatacctctgtcctctgtctcatc 292
           |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 252 tcacttggctaaaggttgaatgcttagctatacctctgtcctctgtctcatc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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