BAC Information

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BAC

Clone NameMSMg01-294E21
Chromosome17 (Build37)
Map Location 30,908,682 - 30,909,043
singlet/doubletsinglet
Overlap geneDnahc8
Upstream geneMdga1, LOC100042885, LOC100042888, Zfand3, Btbd9, EG623169, Glo1, LOC666942, 1700097N02Rik
Downstream geneGlp1r, Umodl1, Abcg1, Tff3, Tff2, LOC100042904, Tff1, Tmprss3, Ubash3a, LOC100042906, Tsga2, EG667056, Slc37a1, Pde9a, Wdr4, 1500032D16Rik, Pknox1, Cbs, LOC623242, U2af1, Cryaa
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-294E21.T7 (MSMg01no294_e21.b1)MSMg01-294E21.TJ (MSMg01no294_e21.g1)
ACCAG422513AG422514
length738739
length of high quality
(start - end)
362 (374 - 735)364 (374 - 737)
definitionCHROMAT_FILE: MSMg01no294_e21.b1 PHD_FILE: MSMg01no294_e21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:29:57 2005CHROMAT_FILE: MSMg01no294_e21.g1 PHD_FILE: MSMg01no294_e21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:29:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAG
GCCATTTCATCTAGACAGGGAAGAGACTGGTCTTGTGCTGAGTAGCAAAT
AACAGCCAAGTAGAACAAATTATGGAGTCCATTGGCATAAGCCCCACTGT
TTGTCCTTTCTGTCCAGAAACTTGTTGACAGAGCAAGCTCATGTATGACA
ATTTATTTGACCTTCACAGTCCCGATGGAGTTACAGACATCCTTCTCTCA
GCTTTCCATATATGGAAACACCCTTGAGGGAAAAACAACAGATAGATATG
TTCTGTTTTTTTCCATGGCCTTCTGGGATGCCAGGTACCACCCACTGGCT
TTCATATTGTAAGCAGTGTAAAGGGCACTTTACAGAAGGACACTGGAGTG
ACTGAAGAGACGATTTTTATATACCATTTTCAGATACCGCCGAAGAGCCC
ACGTGACTCCCAAATCATATCTCTCATTTATAAATGGTTATAAAAGCATT
TACACCGATAAGGTGAAATATATCAATGAACAAGCGGAACGGATGAATAT
CGGTAAGAGGAATGGCCAGTTTTGTCTTTTTCAGGGTTTGTTTAATGGCA
ATCCCAATGTTTTATTGAATGGGTATCATTGTATTTGAAAATCAAACACT
CTGCACTCTTTTTTTTAATTAAAAATATGTATATGTGTATGTGACTGTGT
GTGGATATGTGACTGTGTATATGTATGAACATGTAACN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXACACTGCGGGGTTGGGGAGAGGCTTCAGCCAT
TAAATTGCTTGTCACCCAAGCACGATGAGTGAAGTCTGGTCAGATCCCAT
GAAAGATCCTGGGGGAGCCTGGCAACCACCTGTAACTGTAATTACAAACT
CTGAAAGCAAGGGCAGGGTATCCCCGGAGCAGGCTGGAGAGGAGGCGAGT
CATTGGGTGAGTTCCGAGAGATCTGCCTCTGGGACTCCGGTGGGCGGCTG
ATGTAGAGTGAGTCCAGACATTAATCTCAGGCATACACACACAACCTCAG
GTCTATTTTTTCACATATACACACAAACACACATACATATAAACACACAC
AAACACACACACATACACACATACATATATACACAAACACACACATACAC
ACATAGACACATACACAAAACTCACATATACATGCACATATACACATATA
CACATACTCAAATACACATGCGCAAAACATACACACATAAACATACACAA
ACACACAAAACACACACACAGAAATATACACAAACATATACACACATGCA
CACAGACACACATACACATGCAGACATATACACAAACACACACGCACACA
TGGTTTCTTAAAATGTTCTAAGTAAATCTGTGTTTAAGGAGAAAACCCTC
ATTCTTCACGTATTTCCTAATAGTAAGGAAATTAGCACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no294_e21.b1 MSMg01no294_e21.b1 CHROMAT_FILE:
MSMg01no294_e21.b1 PHD_FILE: MSMg01no294_e21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:29:57 2005
         (362 letters)



>mm_chr17_30908482_30909243
          Length = 762

 Score =  700 bits (362), Expect = 0.0
 Identities = 362/362 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggcactttacagaaggacactggagtgactgaagagacgatttttatataccattttcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggcactttacagaaggacactggagtgactgaagagacgatttttatataccattttcag 260

                                                                       
Query: 61  ataccgccgaagagcccacgtgactcccaaatcatatctctcatttataaatggttataa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ataccgccgaagagcccacgtgactcccaaatcatatctctcatttataaatggttataa 320

                                                                       
Query: 121 aagcatttacaccgataaggtgaaatatatcaatgaacaagcggaacggatgaatatcgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagcatttacaccgataaggtgaaatatatcaatgaacaagcggaacggatgaatatcgg 380

                                                                       
Query: 181 taagaggaatggccagttttgtctttttcagggtttgtttaatggcaatcccaatgtttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taagaggaatggccagttttgtctttttcagggtttgtttaatggcaatcccaatgtttt 440

                                                                       
Query: 241 attgaatgggtatcattgtatttgaaaatcaaacactctgcactcttttttttaattaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attgaatgggtatcattgtatttgaaaatcaaacactctgcactcttttttttaattaaa 500

                                                                       
Query: 301 aatatgtatatgtgtatgtgactgtgtgtggatatgtgactgtgtatatgtatgaacatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aatatgtatatgtgtatgtgactgtgtgtggatatgtgactgtgtatatgtatgaacatg 560

             
Query: 361 ta 362
           ||
Sbjct: 561 ta 562


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 362
Length of database: 762
Length adjustment: 9
Effective length of query: 353
Effective length of database: 753
Effective search space:   265809
Effective search space used:   265809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)