BAC Information

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BAC

Clone NameMSMg01-294I24
Chromosome17 (Build37)
Map Location 41,820,703 - 41,820,875
singlet/doubletsinglet
Overlap genenone
Upstream geneEG619517, Crisp2, Rhag, 9130008F23Rik, EG435528, Cenpq, Mut, Ldha-ps3, LOC627577
Downstream geneLOC627626, Opn5, Gpr115
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-294I24.T7 (MSMg01no294_i24.b1)MSMg01-294I24.TJ (MSMg01no294_i24.g1)
ACCAG422702AG422703
length724794
length of high quality
(start - end)
319 (41 - 359)181 (73 - 253)
definitionCHROMAT_FILE: MSMg01no294_i24.b1 PHD_FILE: MSMg01no294_i24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:16 2005CHROMAT_FILE: MSMg01no294_i24.g1 PHD_FILE: MSMg01no294_i24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ATACTACCTGAGTAGTATTCTATTTTGTAAATGTACCACATTTTCTGTGT
CCATTCCTCTATTGAGGGACATCTGGGTTCTTCCAGCTCCTGGCTATGAC
AAATAAGGCTGCAATGAACATAGTAGAACATGTGTCGTAATTACATGTTG
GAGCAACTTCTACTTATTTGGCCAGGAGTGGAATTGCTGAGTCCATTGTC
CAATTTTCTGACGATCTGCCAAACTGATTTCCAGAGTGGTTGTGCCCGTT
TATAATCTCACCAGCAGTGGAGGAGAGTTCCTCCTTCTCTACATCCTCAC
CAGCATCTCTTGTCTCCTGACCCCCCCCTCAGTTTCATCAGAAATGAAAA
GGGAGACATAACACCACATCTGGAAGAAATCCAAAACACCATCAGATCCT
TCTACAAAAGGCTATACTCAACAAAACTGGAGAACCTGGATGAAATGGAC
AAGTTTCTAGAGAGATACCAGGGTCCAAAGTTAAATCAGGTTAATGATCT
AAACAGTCCTATATCCCCTAAAGAAACAGAAGCAGTCATTATAGTCTCCC
AACCAAAAAAAGCCCAGAACCAGATGGGTTTAGTGCAGAGTTCTATCAGA
CCTTCAAAGAAGATCTAATCCCGGTTCTTCACAAACTATTACACAAAATA
GAAGCAGAAGGTACTCTACCCAAC
GACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATTGCTTTGTGCTTGGCTGGGGACATGG
TGTCAGCAGGGTTGATTGGTTGATTTCTCTAAAGGGAATCTTGTATTGAC
TGGTTTATGGATTTTCTTTTTTCATGGTTGAGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTCTGCTTCTGACTCCTTACC
AATTTATTCATAGTCTCCCTGCAATATGTTTTAAAGACCCTGTCTTTTCC
AACACACTGATATCTCAGGTACTATTTTTCAGGATCCTAATATCTGAACA
CGGCCGGATTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAGAGTTTAA
AAAGAATAGAGCTCACTTCTCCCCCCATAAATAATAAAAAAAAACCCTCC
TGGTGGTGTGGCTTCTCATTGATTAGATCCGACCCCTTTCTTGTACTCAC
ACTTTATTTTTTTTTATATCCATATTCCCTCAAAAATCCATTATATCGCT
CGTTCTATTCCCCCTTCTCGACATTCTCTCTCTATCACAATTCCTTACTT
TGTCTCCGCTTCCATACCCCTTATTATTGCTTTCTTATTCCTTTTCAACT
TCAACCTTTCCTATATCCCTCTTAAACTAGCTCCCACATTTCTCCTACCA
TCTTACTCTCAAATCTCTTCATTCACTCTAATGTCTCCACACCCCTTTTA
TCTATTTTTTTCTTTTCTCTACCTTCTATTCCTCCACCCCCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no294_i24.g1 MSMg01no294_i24.g1 CHROMAT_FILE:
MSMg01no294_i24.g1 PHD_FILE: MSMg01no294_i24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:16 2005
         (181 letters)



>mm_chr17_41820503_41821083
          Length = 581

 Score =  315 bits (163), Expect = 8e-91
 Identities = 173/179 (96%), Gaps = 6/179 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   attgctttgtgcttggctggggacatggtgtcagcagggttgattggttgatttctctaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attgctttgtgcttggctggggacatggtgtcagcagggttgattggttgatttctctaa 260

                                                                       
Query: 61  agggaatcttgtattgactggtttatggattttcttttttcatggttgagtgtgtgtgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agggaatcttgtattgactggtttatggattttcttttttcatggttgagtgtgtgtgtg 320

                                                                      
Query: 121 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctctgcttctgactccttacca 179
           ||||||||||||||||||||||||||||||||     | ||||||||||||||||||||
Sbjct: 321 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg-----c-ctgcttctgactccttacca 373


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 18
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 181
Length of database: 581
Length adjustment: 8
Effective length of query: 173
Effective length of database: 573
Effective search space:    99129
Effective search space used:    99129
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)