Query= MSMg01no294_j22.b1 MSMg01no294_j22.b1 CHROMAT_FILE:
MSMg01no294_j22.b1 PHD_FILE: MSMg01no294_j22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:20 2005
(316 letters)
>mm_chr17_68449761_68450476
Length = 716
Score = 526 bits (272), Expect = e-154
Identities = 302/312 (96%)
Strand = Plus / Plus
Query: 5 gaattctttgcctgtgactcttttgagcaaagggacccagtttgttatttccgtgcaata 64
|||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||
Sbjct: 205 gaattctttgcctgagagtcttttgagcaaagggacccagtttgctatttccgtgcaata 264
Query: 65 acctggaaatgttggccagttaagagttaagtagctgaatggattggccattcagctttc 124
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acctggaaatgttggggagttaagagttaagtagctgaatggattggccattcagctttc 324
Query: 125 tcagcccttagacaacaactgttggctataactcctggatgaactgtgttctagctactc 184
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 325 tcagcccttagataacaactgttgactataactcctggatgaactgtgttctagctactc 384
Query: 185 aggggactgatttgcttggtgataagttcccttcttgactttctccctcatacttctcta 244
|||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct: 385 aggggacttatttgcttggtgataatttcccttcttgtctttctccctcatacttctcta 444
Query: 245 cttccctcctgttttctgggaatcatttacctaactatttgcactcttgaagcaccccca 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cttccctcctgttttctgggaatcatttacctaactatttgcactcttgaagcaccccca 504
Query: 305 ggtcaacttgtg 316
||||||||||||
Sbjct: 505 ggtcaacttgtg 516
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space: 217049
Effective search space used: 217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no294_j22.g1 MSMg01no294_j22.g1 CHROMAT_FILE:
MSMg01no294_j22.g1 PHD_FILE: MSMg01no294_j22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:20 2005
(290 letters)
>mm_chr17_68628443_68629134
Length = 692
Score = 487 bits (252), Expect = e-142
Identities = 282/294 (95%), Gaps = 6/294 (2%)
Strand = Plus / Minus
Query: 1 actgttgtacttgagaaaggaaatagactcttggtttct----atcaacagaaagccagt 56
|||| ||||||| ||||||||||||||||||||| |||| ||| |||||||| ||||
Sbjct: 492 actgctgtacttaagaaaggaaatagactcttgg-ttctaaccatccacagaaagtcagt 434
Query: 57 gaatgaactgcaggctttgtgtatcaagatggcacctctaataattcacctttatggtgg 116
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 433 gaatgaactgcaggctttgtgtatcaagatggcatctctaataattcacctttatggtgg 374
Query: 117 taatgaccaggccaatagggtgtaatgacatgaaattaaagaatgttctctgccataaag 176
||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 373 taacgaccaggccaatagggtgtaatgacatgaaattaaagaatgttctctg-cataaag 315
Query: 177 taaaagaaaaaagacccttgaattcctctttgatatctgactataatagtaacaaaatgt 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 taaaagaaaaaagacccttgaattcctctttgatatctgactataatagtaacaaaatgt 255
Query: 237 agggctgaaggtcgggtctcatgtcttcaatcaactcaactctttgccagttac 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 agggctgaaggtcgggtctcatgtcttcaatcaactcaactctttgccagttac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 692
Length adjustment: 9
Effective length of query: 281
Effective length of database: 683
Effective search space: 191923
Effective search space used: 191923
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
