BAC Information

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BAC

Clone NameMSMg01-294O17
Chromosome17 (Build37)
Map Location 81,384,872 - 81,385,183
singlet/doubletsinglet
Overlap geneTmem178
Upstream geneHnrpll, Gpx4-ps, Galm, Sfrs7, 4930560E09Rik, Gemin6, Dhx57, Morn2, Sos1, Cdkl4, F420015M19Rik, Map4k3, LOC100043697, C230072F16Rik, LOC675572, EG668830
Downstream geneThumpd2, LOC100043700, LOC100043704, Slc8a1, EG668832, LOC100043707
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-294O17.T7 (MSMg01no294_o17.b1)MSMg01-294O17.TJ (MSMg01no294_o17.g1)
ACCAG422962AG422963
length737739
length of high quality
(start - end)
317 (37 - 353)286 (67 - 352)
definitionCHROMAT_FILE: MSMg01no294_o17.b1 PHD_FILE: MSMg01no294_o17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:42 2005CHROMAT_FILE: MSMg01no294_o17.g1 PHD_FILE: MSMg01no294_o17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTAAA
TGAATGCCTGAACACCCTGTTTGAATTTAATCTAGTTTCAAACTCTCAAT
TAAGTTTTTCTCAAACCCTCATTAGTGTATGTGTTATTTGGAAGCTAGAA
GACATTTTTTCCTTAGACAACTTTGACACGGTGGTTTAGGAAGTAATTAT
AATTGATGAACATAAGTTTACTTAGTCTTCCAAGAGGCTGTGTCATCCCT
TAATATCACTGACTTGAACTATGATTTTTTTTCTTCCCCTCAGCTGGTGG
CATAGCTGGTTCCATATATGATACCACTATGTGTAGCCATGGGGTCGTGT
GCTCTTTTTATCCTCTCGCCCCCCCCGCGTCCATTGACTGGCCTTGGTGT
CTATTCCCCCCCCCTAGCCTTCCGAATTCTATGAACAGCGTCTACTGTCT
CTTAAAACTCAGCAACAAACAAAACATACTTCTCTGGGTCAGTCATCTTG
GCCAGTTGTCTGGATAAATGCATCTCACTAAACTGACCTTAGAAACAGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAATTTAAACGAT
ATGTTTTCACTGTTATTAGTTAATTATTCCTTATCCTTACTTCCCCTTTA
TTTTTTATCCGATTTTGTGAATTCTTGATTCTTTTTAAATTTCATTTCTT
ATGTGCGCATTATGGTGCCTCTTCCTAGTTTTTTTTC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXACTGTATAGACCAGGCTGGCTTCAAACTCACAGA
GATGGATCCTTCTGCCCTCCAAGTGCTGGCCTCAAAATGTAGGCCACCAT
GGCCAGCTAGTCTTACAGTTTTGTCTTATATTTATCTTTAAACAACTTGG
AGTTTGGTTTAATTCCATTCTTCTGCATGTGGCTAGCCAGTTTTTCTAAC
AGTGTTTACAAAAAGATTAAAATTTTCCCTATTATGTGTTCTTGGCATCT
TTCTTGAAAATTATTTTTATTGCAAATATGCGGATTTATTTCCTTAATTA
GGTTTGNCATAGATCCCGAGACGGNCCCCCATTGTAGGCTGTCCATCTGG
TTCAGTTCCCCCCCCACCAAAGACAATAAACAGCAGCGAGAGACCCTGGA
AGTCAAATCACCCTGCTATTATGCAACCATATCCACTCTGTTTCCGAAGT
TACATTTGGTGGCTACCCCTCTGGGCATGCACCAAATCCACTGGGATCAG
GGAACTAATTTCAGTAGCAGTGTCTCCCACTTCATCTTCAGGGTCCCGAA
GACATTCAACGAAGTGTTCTTCAAGGAGCCGGGTACTTCAGGAATGTTTT
TCTCATATCATTAGAAAAGAGAATTTCTTCTGGGCTTATTTTGGCCGTGT
GTGAGATGTGCAAATTTGTTCCGAATTCTCTACCTCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no294_o17.b1 MSMg01no294_o17.b1 CHROMAT_FILE:
MSMg01no294_o17.b1 PHD_FILE: MSMg01no294_o17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:42 2005
         (317 letters)



>mm_chr17_81384668_81385384
          Length = 717

 Score =  549 bits (284), Expect = e-161
 Identities = 305/312 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctaaatgaatgcctgaacaccctgtttgaatttaatctagtttcaaactctcaat 64
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 gaattctaaatggatgcctgaacaccctgtttgaatttaatctagtttcaaactctcaat 457

                                                                       
Query: 65  taagtttttctcaaaccctcattagtgtatgtgttatttggaagctagaagacatttttt 124
           |||||||||| ||||   ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 taagtttttcccaaaaattcattagtgtatgtgttatttggaagctagaagacatttttt 397

                                                                       
Query: 125 ccttagacaactttgacacggtggtttaggaagtaattataattgatgaacataagttta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 ccttagacaactttgacacggtggtttaggaagtaattataattgatgaacataagttta 337

                                                                       
Query: 185 cttagtcttccaagaggctgtgtcatcccttaatatcactgacttgaactatgatttttt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 cttagtcttccaagaggctgtgtcatcccttaatatcactgacttgaactatgatttttt 277

                                                                       
Query: 245 ttcttcccctcagctggtggcatagctggttccatatatgataccactatgtgtagccat 304
           |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 276 ttcttcccctcagctggtggcatagctggtcccatatatgataccgctatgtgtagccat 217

                       
Query: 305 ggggtcgtgtgc 316
           ||||||||||||
Sbjct: 216 ggggtcgtgtgc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)