Query= MSMg01no296_m08.b1 MSMg01no296_m08.b1 CHROMAT_FILE:
MSMg01no296_m08.b1 PHD_FILE: MSMg01no296_m08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:33:03 2005
(581 letters)
>mm_chr17_16998250_16999230
Length = 981
Score = 1017 bits (526), Expect = 0.0
Identities = 568/591 (96%), Gaps = 16/591 (2%)
Strand = Plus / Plus
Query: 1 ttttaaagttcacatatgaatctttgcctctcttttcctctctctctctctctctctctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 ttttaaagttcacatatgaatctttgcctctcttttcctctctctctctctctctctctc 256
Query: 61 tctctctctctctctctctctctttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtg 120
||||||||||||||| | | |||||||||||||||||||||||||||||||||||
Sbjct: 257 tctctctctctctctgtgt------gtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtg 310
Query: 121 tg----cgc------gcgtgaacacatgggtgtgtgtattgctggcacagatttgagtag 170
|| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 tgtgtgcgctcgcacgcgtgaacacatgggtgtgtgtattgctggcacagatttgagtag 370
Query: 171 tttctaatatagaaagtcaaattgaatttctaacattatacatatcttaaagatttttta 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 tttctaatatagaaagtcaaattgaatttctaacattatacatatcttaaagatttttta 430
Query: 231 ttagagagagagtatttgtgttttaagcatgcagatcctgtaataaccagttaattttac 290
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 ttagagagagagtatttgtgttttaagcatgcagatcctgtaataaccagttaattttat 490
Query: 291 gaccacatatatgtttggcaaacagcacattacacctagagttaaattactcagtattat 350
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 gagcacatatatgtttggcaaacagcacattacacctagagttaaattactcagtattat 550
Query: 351 gtaccacataaaaataaaaaataacacacatactgccttctccttccatctatagtttga 410
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 551 gtaccacataaaaataaaaaataatacacatactgccttctccttccatctatagtttga 610
Query: 411 agacagtgataacagtaaatttcatgtaccaaatttggcattaaaatattttccattctg 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 agacagtgataacagtaaatttcatgtaccaaatttggcattaaaatattttccattctg 670
Query: 471 agtaaaatataanagactgagattcagacttcataatatctccataaattctcctaatga 530
|||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 671 agtaaaatataaaagactgagattcagacttcataatatctccataaattgtcctaatga 730
Query: 531 gataagtgaaggagaggtctactaataaagaagtctgggagatactgttta 581
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 gataagtgaaggagaggtctactaataaagaagtctgggagatactgttta 781
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 69
Number of extensions: 16
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 981
Length adjustment: 10
Effective length of query: 571
Effective length of database: 971
Effective search space: 554441
Effective search space used: 554441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no296_m08.g1 MSMg01no296_m08.g1 CHROMAT_FILE:
MSMg01no296_m08.g1 PHD_FILE: MSMg01no296_m08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:33:03 2005
(662 letters)
>mm_chr17_17042349_17043410
Length = 1062
Score = 1272 bits (658), Expect = 0.0
Identities = 661/662 (99%)
Strand = Plus / Minus
Query: 1 taggatgcctttcatttctgtctttatttcttccttgactcagttgtcaatgactagaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1040 taggatgcctttcatttctgtctttatttcttccttgactcagttgtcaatgactagaga 981
Query: 61 gttcttcaatttctatgaatttgtaggctttctgttgttactgttgtttaaatctagctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 980 gttcttcaatttctatgaatttgtaggctttctgttgttactgttgtttaaatctagctt 921
Query: 121 taatccactgcatctgataggaaacaggggtttatttcaattttcttgtatccgctgaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 920 taatccactgcatctgataggaaacaggggtttatttcaattttcttgtatccgctgaga 861
Query: 181 cttgatttgttaccatctatatggtccattttggagaaggttccacattaccctgggatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 860 cttgatttgttaccatctatatggtccattttggagaaggttccacattaccctgggatg 801
Query: 241 aagatatatcttttgtgtttgggtgaaatgttctgcagatatctgtttgagacatatcat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 aagatatatcttttgtgtttgggtgaaatgttctgcagatatctgtttgagacatatcat 741
Query: 301 cggtttttaattttggagtcttggcaggactgccttgaaatccacaactacaaatagctt 360
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 740 cggtttttaattttggagtcttggcaggactgccttgaaattcacaactacaaatagctt 681
Query: 361 aagaggctatgtgaggaagttcgaagagtcctaaaactggatacttatgatagtgttaga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 aagaggctatgtgaggaagttcgaagagtcctaaaactggatacttatgatagtgttaga 621
Query: 421 tttcatttatatatatgactttctaaaatccattaaactttacttaaaagagtaaataat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tttcatttatatatatgactttctaaaatccattaaactttacttaaaagagtaaataat 561
Query: 481 atctgtggagtttggtatctcaatgaaaaatctctatggggtaagagcacccgactgctc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 atctgtggagtttggtatctcaatgaaaaatctctatggggtaagagcacccgactgctc 501
Query: 541 ttccgaaggtctgaagttcaaatcccagcaaccacatggtggctcacaaccatctgtaac 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ttccgaaggtctgaagttcaaatcccagcaaccacatggtggctcacaaccatctgtaac 441
Query: 601 aagatctgacgccctcttctggagtgtctgaagacagctacagtgtacttacatataata 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aagatctgacgccctcttctggagtgtctgaagacagctacagtgtacttacatataata 381
Query: 661 aa 662
||
Sbjct: 380 aa 379
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1062
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1052
Effective search space: 685904
Effective search space used: 685904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
