Query= MSMg01no297_a15.b1 MSMg01no297_a15.b1 CHROMAT_FILE:
MSMg01no297_a15.b1 PHD_FILE: MSMg01no297_a15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:33:23 2005
(351 letters)
>mm_chr17_5893932_5894682
Length = 751
Score = 663 bits (343), Expect = 0.0
Identities = 349/351 (99%)
Strand = Plus / Minus
Query: 1 ctaaaaactggacgagggtagctagctagctctggggatgataccaagaggactgaaggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 ctaaaaactggacgagggtagctagctagctctggggatgataccaagaggactgaaggc 492
Query: 61 cagcaggcacagcaggcaaactaacagtgattcaggcatgacagcaacaacagcaagctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 cagcaggcacagcaggcaaactaacagtgattcaggcatgacagcaacaacagcaagctg 432
Query: 121 tcagaacagtgcacagtttccactctcagtgagagtcccatttgtttgtggattgcttct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 tcagaacagtgcacagtttccactctcagtgagagtcccatttgtttgtggattgcttct 372
Query: 181 ggacaggagaaaataccacacaatggagggagactatcgtccagccaacccaggtatcat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 ggacaggagaaaataccacacaatggagggagactatcgtccagccaacccaggtatcat 312
Query: 241 tggtatgaacatgtgactgaccagatactgtgtattttgatgtgatgtaacatgaaacat 300
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 tggtatgaacaggggactgaccagatactgtgtattttgatgtgatgtaacatgaaacat 252
Query: 301 tgaactgcatctacgatgcagcctgtacttctcatgttcacgcagggacta 351
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 tgaactgcatctacgatgcagcctgtacttctcatgttcacgcagggacta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 351
Length of database: 751
Length adjustment: 9
Effective length of query: 342
Effective length of database: 742
Effective search space: 253764
Effective search space used: 253764
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no297_a15.g1 MSMg01no297_a15.g1 CHROMAT_FILE:
MSMg01no297_a15.g1 PHD_FILE: MSMg01no297_a15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:33:23 2005
(619 letters)
>mm_chr17_5719492_5720508
Length = 1017
Score = 1085 bits (561), Expect = 0.0
Identities = 604/619 (97%), Gaps = 2/619 (0%)
Strand = Plus / Plus
Query: 1 atgcttgcacgctctcacatatacacctatatgtggctaagaagtggctggcaccttaca 60
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 atgcttgcacgctctcacatatacacctatatgtggctaagaagtggcttacaccttaca 260
Query: 61 aagaccctactcttcgtgttgtcccacagtttggctttgttttaaaatattacagggaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagaccctactcttcgtgttgtcccacagtttggctttgttttaaaatattacagggaga 320
Query: 121 taaatctacctcgttcttttttacctaccttctaaatctccctgcacaggcagcatgttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaatctacctcgttcttttttacctaccttctaaatctccctgcacaggcagcatgttc 380
Query: 181 tttgggtggagaatcacattccttcctttctgtcctgttctaaaggcgagatcgtagggc 240
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 381 tttgggtggagaatcacattccttcctttctgtcctgttctaaaggcgagatggtagggc 440
Query: 241 tcagtgcataggtactcacctataacccgaatacttgggaagctgagattgaggacagca 300
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcagtgcagaggtactcacctataacccgaatacttgggaagctgagattgaggacagca 500
Query: 301 cctttgggtgggcgaccatggcaggcagcacccacagacaaggagtggggagggtagaag 360
|||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 501 cctttgggtgggtgaccatggcaggcagcacccacagataaggagtggggagggtagaag 560
Query: 361 ccatccaatagggaaattctcaggaacatggttttttcctggtgagatcccaaaagcatc 420
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 561 ccatccaatagggaaattctcaggaacatggtttttacctggtgagatcccaaaagcatc 620
Query: 421 ttgggaatgatactggtccatggtcacctgcctcagaatgacacatccgttctcccgact 480
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 621 ttaggaatgatactggtccatggtcacctgcctcagaatgacacgtccgttctcccgact 680
Query: 481 ttgttctgtgagccatgccgggacttgccccgtctgtcccagtgccatcccttactctga 540
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtg--ctgtgagccatgccgggacttgccccgtctgtcccagtgccatcccttactctga 738
Query: 541 tgactggcagcgtctctccgtgccctcacgcagtggtggttcttgttcggtttcccactg 600
||||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct: 739 tgactggcaacgtctctccgtgccctcacgcggtggtggttcttgtttggtttcccactg 798
Query: 601 ctcttgtacagcttgtcac 619
|||||||||||||||||||
Sbjct: 799 ctcttgtacagcttgtcac 817
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1017
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1007
Effective search space: 613263
Effective search space used: 613263
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
