BAC Information

Click to search

BAC

Clone NameMSMg01-297M11
Chromosome17 (Build37)
Map Location 76,576,938 - 76,577,440
singlet/doubletsinglet
Overlap genenone
Upstream geneLtbp1, Rasgrp3, 2810405J04Rik, LOC668787, LOC100043885
Downstream geneLOC100043886, EG624348
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-297M11.T7 (MSMg01no297_m11.b1)MSMg01-297M11.TJ (MSMg01no297_m11.g1)
ACCAG425011AG425012
length735730
length of high quality
(start - end)
503 (45 - 547)615 (75 - 689)
definitionCHROMAT_FILE: MSMg01no297_m11.b1 PHD_FILE: MSMg01no297_m11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:34:17 2005CHROMAT_FILE: MSMg01no297_m11.g1 PHD_FILE: MSMg01no297_m11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:34:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGGATCCGCGGA
ATTCACAGTAGCTATGCTTAGATGCACAAGACTTGCAAGAGGTCAAGCCC
ACCAAAATTCCAGCATAAATGGGTAGATAATTCCAGACTTTGTATTTTAC
TGGGAAGTTCAATATAGTGGAGAGCTGCTGATGTATAGAGACTCATTCTG
TTTTGAGTATGTGTGTGCTAGTAGGTTTTTCATATTCTGATGAACTGGCC
CCACAACAAAAACAAGTAAGTAACAAGATTTGCAGAAGTTGCAAAGGATA
TTTAGGATAATAATGAGGTTATTTTATGATCACATTTTGCTGTAAAATGC
TGTTGAATGTTTCTAAAATAAATAAAATGCATTTTTAATAGCAAAATCCC
TTCTAGGAAGTATTTGATAAAATCCACAACAAACATTTACATAATGGTGA
ACAGTAACATTTTTTTCTTTATGATTCTGAATAAGATAAAATGTCTTTTC
TTACAACTTGAATATATATATATATATATATATATAATTTTTTGATACAG
AGTCTACATATATATATACCACCCTAGTTATCTTGGGACTAACGATGTAG
ACCATCCTAGTCTCAAACTCATAGAGATCTGAGTGCTTCTGCCTTCTGAT
TGGCAGAAAGGCGTGAGCTATTATGCCCAGCCAATTCAAAAAATTTTAAG
AGAAGTATAGGCAATATTCACCTTCAAGGAAGTTA
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAGACTTTTATCATG
AATGGGTGTTGGATTTTTTAAAAAGTTTTTCTCGCATCTAAGGAGATCAT
CATGTGGTTTTTGTCTTTGAGTTTGTTTATATAATGGATTACGTTGATGG
ATTTCCATATTTTAAACTATCACTGCATCCCTGGAATGAAACCTACTTGG
CCAGGATGGATGATTGTTTTGAAGTGTTCTTGGATTCAGTTAGTGAGAAT
TTTATTGAGTATTTTTGCATCTATATTCTTAAGGGAAATTAGTCTGAAGT
TCCCTATCTTTGTTGGGTCTTTCTGTGGTTTAGGTATCAGAGTAATTGTG
GCTTCATAGAATGAATTGCGTAGGGTACCTTCTGCTTCTATTTTGTGGAA
TAGTTTGTGAAGAACTCAAATTAGATCTTCTTTGAAGGTCTGACAGAACT
CTGCACTAAACCCATCTGGTCCTGGACTTTTTTTGGTTGGGAGACTATTA
ATGACTACTTCTCTTTCTTTAGGGGATATAGGACTGCTTAGATCATTAAC
CTGATCTTGATTTAACTTTGGTACCTGGTATCTCTCTAGAAATTTGTCCA
TTTCATCCAGGTTTTCCAGTTTTGTTGATTATAGCCCTTTGTAGAAGAAT
CTGATGGTGTTTTGAATTTCTTCAGGATCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no297_m11.b1 MSMg01no297_m11.b1 CHROMAT_FILE:
MSMg01no297_m11.b1 PHD_FILE: MSMg01no297_m11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:17 2005
         (503 letters)



>mm_chr17_76576567_76577469
          Length = 903

 Score =  872 bits (451), Expect = 0.0
 Identities = 490/505 (97%), Gaps = 8/505 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacagtagctatgcttagatgcacaagacttgcaagaggtcaagcccaccaaaat 64
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 874 gaattcacagtagctatggttagatgcacaagacttgcaagaggtcaagcccaccaaaat 815

                                                                       
Query: 65  tccagcataaatgggtagataattccagactttgtattttactgggaagttcaatatagt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 814 tccagcataaatgggtagataattccagactttgtattttactgggaagttcaatatagt 755

                                                                       
Query: 125 ggagagctgctgatgtatagagactcattctgttttgagtatgtgtg-tgctagtaggtt 183
           ||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 754 ggagaactgctgatgtatagagactcattctgttttgagtatgtg-gctgctagtaggtt 696

                                                                       
Query: 184 tttcatattctgatgaactggccccacaacaaaaacaagtaagtaacaagatttgcagaa 243
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 695 tttcatattctgatgaactggccccacaacaagaacaagtaagtaacaagatttgcagaa 636

                                                                       
Query: 244 gttgcaaaggatatttaggataataatgaggttattttatgatcacattttgctgtaaaa 303
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 gttgcaaaggaaatttaggataataatgaggttattttatgatcacattttgctgtaaaa 576

                                                                       
Query: 304 tgctgttg-aatgtttctaaaataaataaaatgcatttttaatagcaaaatcccttctag 362
           |||||||| ||| |||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 575 tgctgttgaaat-tttcaaaaataaagaaaatgcatttttaatagcaaaatcccttctag 517

                                                                       
Query: 363 gaagtatttgataaaatccacaacaaacatttacataatggtgaacagtaacattttttt 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 gaagtatttgataaaatccacaacaaacatttacataatggtgaacagtaacattttttt 457

                                                                       
Query: 423 ctttatgattctgaataagataaaatgtcttttcttacaacttgaatatatatatatata 482
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 ctttatgattcagaataagataaaatgtcttttcttacaacttgaatatatatatatata 397

                                    
Query: 483 tatatat----ataattttttgata 503
           |||||||    ||||||||||||||
Sbjct: 396 tatatatatacataattttttgata 372


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space:   440249
Effective search space used:   440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)