BAC Information

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BAC

Clone NameMSMg01-298A02
Chromosome17 (Build37)
Map Location 21,396,811 - 21,566,216
singlet/doubletdoublet
Overlap geneV1rf2, V1rf4, V1rf3, A830058L05Rik, Zfp54
Upstream geneEG224576, V2r6, EG637720, EG665525, EG627805, V1re5, EG627814, EG381065, EG224582, Fpr-rs3, EG433073, V1re2, V1re6, LOC100041976, V1re3, V1re1, V1re8, V1re7, V1re4, LOC627884, Ppp2r1a, V1rf5, Zfp160, LOC627912, LOC435509, EG627924, 4933430A09, EG665654, EG665662, LOC665666, EG665669, V1rf1
Downstream geneZfp51, Zfp53, LOC100042508, Zfp52, BC049807, Zfp760, BC043476, 4930515G13Rik, 2610036F08Rik, LOC624960, 3110048L19Rik, 4930432O21Rik, LOC665820, LOC665825, LOC674332, LOC631010, EG665844, EG210853, LOC671007, EG240038, EG631624, 6330416L07Rik, Zfp758, 1300003B13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-298A02.T7 (MSMg01no298_a02.b1)MSMg01-298A02.TJ (MSMg01no298_a02.g1)
ACCAG425173AG425174
length713722
length of high quality
(start - end)		544 (23 - 566)473 (58 - 530)
definitionCHROMAT_FILE: MSMg01no298_a02.b1 PHD_FILE: MSMg01no298_a02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:34:35 2005CHROMAT_FILE: MSMg01no298_a02.g1 PHD_FILE: MSMg01no298_a02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:34:35 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,396,811 - 21,397,352)(21,565,823 - 21,566,216)
sequence
CCTACTATATCGAGAGGAGGCGCGGAATTCATTAAAGTCTCCCACAAATG
GATGGATCTGGAGGATATCATCCTGAGTGAGGTAGCCCAATCACAAAAGA
ACACACATGATATGCACTCACTGATAAGTGGAAATTAGCCCAGACACTCA
GAAAACCTAAGATAATTTTGTTCTTTGAATAATAACTAGTATTAATTTAT
AAGATTATTGAAATTACTCTTAGAAATGACTGCCAATATTTTAATGAAAA
CATGCTTGTTCCTAATTTGGGGTAAAACAAAATAAATGGAGACAATATTT
GTATCTCTTTTGCAAATATAGATGCTGTTGGGTTCCTTAAATAATTTTTC
TCTGTATATAGAAAAGGGCAGTGAACTAAATGCTGTCTGCCTGATGCCAG
CTGTTAGATAGTGTTTAGTTTTCTAATAATGATATCAATTGGAGCAATTA
AACTTCCCTGGTGTAATAATTTAATATTAAGAAGTGTGAATATGTGTAAG
TCTAGATATATAGAATACTTTTGACATCATAAAATCTCATCTGTGAACTA
GAAGTGATCTTAAAGCAACAGTCTAATTCACATTTTACACCATTCTCAAC
TTAAACAAATAAACTTCATTTTTTTTACCACACAGTGTTTCATGCACGTC
TTATAAATTCTCAATTTTTCCCCAGGTCCTTAACTCAAAAAAACAGGTAT
GGTTTAGCCTTCN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXACTAACAGTTACAGAAACCAAGGGAATAAAACTGGCAATCTAA
GAACACCACAGTGGACACTGAGACTTGTTGTCAGCCCATGGGCACAAGGC
ACACATGAAACTGTTTGAGGTATGAAGCTGTTTCTTTCTTTTTTTTTTAG
ATTTATTTATTATTATATGTAAGTACACTGTAGCTGTCTTTAGACACACC
GGAGGAGGTCATCAGATCTCATTGTGAGTGGTTGTGAGCCACCATGTGGT
TGCTGGGATTTGAACTCAGGACCTTCAGAAGAGCAGTCAGTGCTCTTACC
CACTGAGCCATCTCTCCAGCCCCTGATGAAGCTGTTTCTTGTAGACTTCT
TGTTCAAGTACTGTTGGAAAGCTATGTACAATTTACTCAGTGTAAGCAGG
AGTCACTTATGAAAACAATATAGCATTACATACTTGCCTGTCAAAAAATA
AATAAAAATAAAACTGCCAATCAACAAATGGGCAAATGAACTGAAATCAG
ACACTTTTGAACAGAAAAAAACACAAATGGCCAATAAATTGCTGTCATAA
AAATGCAAAGCAAAACCACTTTAATTAGTGCCTCACCCCCAGGCAGAATG
GCTGTTTAATCAGCCTGACAACAAATGTTATAGAGATTGTGGAGAAAAAG
AAACCCTAGTCACCTCTTTGGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no298_a02.b1 MSMg01no298_a02.b1 CHROMAT_FILE:
MSMg01no298_a02.b1 PHD_FILE: MSMg01no298_a02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:35 2005
         (544 letters)



>mm_chr17_21396609_21397552
          Length = 944

 Score = 1017 bits (526), Expect = 0.0
 Identities = 538/542 (99%)
 Strand = Plus / Plus

                                                                       
Query: 3   gaattcattaaagtctcccacaaatggatggatctggaggatatcatcctgagtgaggta 62
           ||||||||||||||||   ||||||||||||||||||||||||||| |||||||||||||
Sbjct: 203 gaattcattaaagtcttagacaaatggatggatctggaggatatcaccctgagtgaggta 262

                                                                       
Query: 63  gcccaatcacaaaagaacacacatgatatgcactcactgataagtggaaattagcccaga 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gcccaatcacaaaagaacacacatgatatgcactcactgataagtggaaattagcccaga 322

                                                                       
Query: 123 cactcagaaaacctaagataattttgttctttgaataataactagtattaatttataaga 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 cactcagaaaacctaagataattttgttctttgaataataactagtattaatttataaga 382

                                                                       
Query: 183 ttattgaaattactcttagaaatgactgccaatattttaatgaaaacatgcttgttccta 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ttattgaaattactcttagaaatgactgccaatattttaatgaaaacatgcttgttccta 442

                                                                       
Query: 243 atttggggtaaaacaaaataaatggagacaatatttgtatctcttttgcaaatatagatg 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 atttggggtaaaacaaaataaatggagacaatatttgtatctcttttgcaaatatagatg 502

                                                                       
Query: 303 ctgttgggttccttaaataatttttctctgtatatagaaaagggcagtgaactaaatgct 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ctgttgggttccttaaataatttttctctgtatatagaaaagggcagtgaactaaatgct 562

                                                                       
Query: 363 gtctgcctgatgccagctgttagatagtgtttagttttctaataatgatatcaattggag 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 gtctgcctgatgccagctgttagatagtgtttagttttctaataatgatatcaattggag 622

                                                                       
Query: 423 caattaaacttccctggtgtaataatttaatattaagaagtgtgaatatgtgtaagtcta 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 caattaaacttccctggtgtaataatttaatattaagaagtgtgaatatgtgtaagtcta 682

                                                                       
Query: 483 gatatatagaatacttttgacatcataaaatctcatctgtgaactagaagtgatcttaaa 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 gatatatagaatacttttgacatcataaaatctcatctgtgaactagaagtgatcttaaa 742

             
Query: 543 gc 544
           ||
Sbjct: 743 gc 744


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 944
Length adjustment: 10
Effective length of query: 534
Effective length of database: 934
Effective search space:   498756
Effective search space used:   498756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no298_a02.g1 MSMg01no298_a02.g1 CHROMAT_FILE:
MSMg01no298_a02.g1 PHD_FILE: MSMg01no298_a02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:35 2005
         (473 letters)



>mm_chr17_21565344_21566216
          Length = 873

 Score =  754 bits (390), Expect = 0.0
 Identities = 393/394 (99%)
 Strand = Plus / Minus

                                                                       
Query: 80  catgggcacaaggcacacatgaaactgtttgaggtatgaagctgtttctttctttttttt 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 873 catgggcacaaggcacacatgaaactgtttgaggtatgaagctgtttctttctttttttt 814

                                                                       
Query: 140 ttagatttatttattattatatgtaagtacactgtagctgtctttagacacaccggagga 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 813 ttagatttatttattattatatgtaagtacactgtagctgtctttagacacaccggagga 754

                                                                       
Query: 200 ggtcatcagatctcattgtgagtggttgtgagccaccatgtggttgctgggatttgaact 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 ggtcatcagatctcattgtgagtggttgtgagccaccatgtggttgctgggatttgaact 694

                                                                       
Query: 260 caggaccttcagaagagcagtcagtgctcttacccactgagccatctctccagcccctga 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 693 caggaccttcagaagagcagtcagtgctcttacccactgagccatctctccagcccccga 634

                                                                       
Query: 320 tgaagctgtttcttgtagacttcttgttcaagtactgttggaaagctatgtacaatttac 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 tgaagctgtttcttgtagacttcttgttcaagtactgttggaaagctatgtacaatttac 574

                                                                       
Query: 380 tcagtgtaagcaggagtcacttatgaaaacaatatagcattacatacttgcctgtcaaaa 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 tcagtgtaagcaggagtcacttatgaaaacaatatagcattacatacttgcctgtcaaaa 514

                                             
Query: 440 aataaataaaaataaaactgccaatcaacaaatg 473
           ||||||||||||||||||||||||||||||||||
Sbjct: 513 aataaataaaaataaaactgccaatcaacaaatg 480


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 873
Length adjustment: 10
Effective length of query: 463
Effective length of database: 863
Effective search space:   399569
Effective search space used:   399569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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