Query= MSMg01no298_a23.b1 MSMg01no298_a23.b1 CHROMAT_FILE:
MSMg01no298_a23.b1 PHD_FILE: MSMg01no298_a23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:39 2005
(699 letters)
>mm_chr17_18761062_18762158
Length = 1097
Score = 750 bits (388), Expect = 0.0
Identities = 630/720 (87%), Gaps = 35/720 (4%)
Strand = Plus / Plus
Query: 4 gaattcttagtagattcttctacatatccctcaataaagtttcatttctgcctgttgcgt 63
|||| ||||||||| || ||| |||||| |||| |||||||||||||||||||||| ||
Sbjct: 204 gaatccttagtagaggctgctagatatccttcaacaaagtttcatttctgcctgttgtgt 263
Query: 64 actaccttgttgatgattctaccccaatttgctggcaactgaaatcgttttctaattcca 123
|||||||||||||||||||||||||||||| ||||||| ||||||| ||||||| ||||
Sbjct: 264 actaccttgttgatgattctaccccaattttctggcaaatgaaatcattttctatttccg 323
Query: 124 tatactgtatttgaagtttctactatgtgataagtcataaaaaatattttcttagttttt 183
|||||||||||||| ||||||| | ||||||||| ||| |||||||||||||||||||||
Sbjct: 324 tatactgtatttgatgtttctattgtgtgataagacat-aaaaatattttcttagttttt 382
Query: 184 ccatagcatgaacacttgaccattactcaatgcttgctgtacctctctctaataaaaatt 243
| ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 383 ctatagcatgaacccttgaccatcactcaatgcttgctgtacctctctctaataaaaatt 442
Query: 244 atgattttactttcttgagtcatctatgtgtttctaccatcaacaaat-ttttgctattt 302
||||||||||||||||||||||||| | ||||||||||| |||| | | |||| || |||
Sbjct: 443 atgattttactttcttgagtcatct-tttgtttctaccaacaac-agtcttttcctgttt 500
Query: 303 attgaatctgtacaaaaaatt---cttttctct-tttct-t-ttcttttcttttcttttc 356
|||||| || ||| |||||| ||||||||| ||||| | | ||| ||||| ||| ||
Sbjct: 501 attgaacctttac--aaaattttccttttctctctttctctatccttctctttccttctc 558
Query: 357 ttttcttttcttttcttttctt-t-ttttcttttcttttcttttcttttc-ttttcc-tt 412
|||||||||||| ||||||||| | ||| ||| ||||| |||| ||||| |||||| ||
Sbjct: 559 ttttcttttcttctcttttcttctctttacttgccttttattttattttctttttccttt 618
Query: 413 tttctcttctcttctccttttcttttctcttcctttcttttctcttcttttcttttgtct 472
||||||||||||| ||||| ||| || ||||||| ||| || ||||||||| || |||
Sbjct: 619 tttctcttctctt---cttttatttactgttccttt-tttcct-ttcttttctattctct 673
Query: 473 ctttt-----tttcattcatcttcactttcttattttctttcattcatttttcttgtttc 527
||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct: 674 cttttctttctttcattcatcttccctttcttattttctttcattcatttttcttatttc 733
Query: 528 ttcttccctgt----ctttattctttcattctttctt--t--catttgaaaaactaatga 579
||||||||| | || ||||||||| || |||||| | |||||| |||||||||||
Sbjct: 734 ttcttcccttttttcctatattctttctttgtttcttcctcgcatttg-aaaactaatga 792
Query: 580 ttttattgggattttctgcagacatatgggtaaggactaacttacaggagtagagacatc 639
||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct: 793 ttttattcagattttctgcagacatatgggtaaggactaacttaaaggagtagaaacatc 852
Query: 640 agctaaacactgaaaagcctacctcagaatggtaagacatcatgaaagttatatcattgg 699
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 853 agctaaacactgaaaatcctacctcacaatggtaagacatcatgaaagttatatcattgg 912
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 699
Length of database: 1097
Length adjustment: 10
Effective length of query: 689
Effective length of database: 1087
Effective search space: 748943
Effective search space used: 748943
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no298_a23.g1 MSMg01no298_a23.g1 CHROMAT_FILE:
MSMg01no298_a23.g1 PHD_FILE: MSMg01no298_a23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:39 2005
(669 letters)
>mm_chr17_18866762_18867834
Length = 1073
Score = 679 bits (351), Expect = 0.0
Identities = 569/646 (88%), Gaps = 22/646 (3%)
Strand = Plus / Minus
Query: 1 ttataaatagaaattttgtaccaatatacatagctaaataagtattcctaagttcaatga 60
|||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct: 637 ttatgaatagaaattttgtaccaatgtacatagctaagtaagtattcctaagttcaatga 578
Query: 61 agaatactttggctttctactcagaaatgataaggctctctgtcctgttttaatgttttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 agaatactttggctttctactcagaaatgataaggctctctgtcctgttttaatgttttt 518
Query: 121 aggaatctccactaaagtttccatagtgattttgtagtc-atatagtgtattagaactgg 179
|||||| ||||| ||||||||||||||| ||||||||| || ||| ||| |||||| |
Sbjct: 517 aggaatatccacaaaagtttccatagtggctttgtagtcgtta-agtatatgagaactag 459
Query: 180 aaaatattctgatattccaacaaacaactttcaatctgttctcattattgtctttgaagt 239
|||||||||||||||| ||||| |||||||||||||||||| |||| ||||||| ||||
Sbjct: 458 aaaatattctgatatttcaacaggcaactttcaatctgttcttattactgtctttaaagt 399
Query: 240 agccttttgttctcagatgaaatggaatattaagttagtattgatttagttttatctgat 299
| |||||| | ||| |||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 398 aaccttttctactctgatgaaatggaatattaagttagtattgatttaggtttctctgat 339
Query: 300 aa----tgatgttgaatttattgcaaagaaataattattgcccttaatgtttcttcattt 355
|| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 338 aaataatgatgttgaatttattgcaaagaaataattattgaaattaatgtttcttcattt 279
Query: 356 tagaaaagtcttttcatcaaattagagtacttatttatgagcaagttattgtcaaagtta 415
||||||| | ||||||| |||||| ||||||||||||||| |||||||||||| ||||
Sbjct: 278 tagaaaatttttttcattaaattacagtacttatttatgaataagttattgtcagtgtta 219
Query: 416 tttgtcttgga-cattttattatatattctagataggaaacacaatgtggcatagatttt 474
|||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 tttggct-ggaacattttattatatattctagataggaaacacaatgtggcatagatttt 160
Query: 475 acaacattctcttgaatttcataggctgtttagtcattct--gggaaaagtttc-ctttg 531
|||| ||| |||||| ||||||| |||||||||| ||| |||| |||| | |||||
Sbjct: 159 acaaaattttcttgagtttcatacactgtttagtc--tctatgggaccagtt-cactttg 103
Query: 532 ctctgtataaactaatttcatgcagtctca--ttgtgtgtgtttt-aagat-cattcaat 587
|| || ||||| ||||| ||| | | ||| |||||| |||| | || || |||||| |
Sbjct: 102 ctgtggataaaataatt-cataaa-t-tcaaattgtgtttgttatgaa-atgcattcact 47
Query: 588 atttgcaaaaatctttttcagagagtttgtatctganagttgaagt 633
| ||||||||||| |||||||| |||||||||||| |||||||||
Sbjct: 46 agctgcaaaaatctctttcagagggtttgtatctgaaagttgaagt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1073
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1063
Effective search space: 700517
Effective search space used: 700517
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
