BAC Information

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BAC

Clone NameMSMg01-298E14
Chromosome17 (Build37)
Map Location 45,527,805 - 45,528,050
singlet/doubletsinglet
Overlap genenone
Upstream geneRunx2, Supt3h, 4930564C03Rik, EG210562, EG668314
Downstream geneCdc5l, Spats1, EG668319, Aars2, Tcte1, Gm323, Nfkbie, Slc35b2, Hsp90ab1, Slc29a1, EG653016, Capn11, Tmem63b, Mrpl14, LOC100043363, Vegfa, Mrps18a, 1700027N10Rik, Mad2l1bp, Gtpbp2, Polh, Xpo5, Rpo1-1, Yipf3, Gm88, Tjap1, Egfl9, Abcc10, BC040756, Zfp318
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-298E14.T7 (MSMg01no298_e14.b1)MSMg01-298E14.TJ (MSMg01no298_e14.g1)
ACCAG425379
length728815
length of high quality
(start - end)
---247 (135 - 381)
definitionCHROMAT_FILE: MSMg01no298_e14.b1 PHD_FILE: MSMg01no298_e14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:34:56 2005CHROMAT_FILE: MSMg01no298_e14.g1 PHD_FILE: MSMg01no298_e14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:34:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXX
NATTCAATCCACCCNCTATNTTTTATTTTCCTCCCTTTGCCCCCNCTTAT
CCNNNNTCGCTATGATXXXXXXXXXXXXXXXXXXXXXXXXXTTCANCACG
GGGGGGNGACACTATAGAATTTCCGACAAAATTCCAGGCTGGTTTAGAAC
ATACAGTCCTGACTCTGGCTTGGAATGTGAAGTGATCCTCCCGCCTCACC
TCCTGAGTGCTGGGATTACAGGTATGAGTTGCTGTATGACGTCTGGTGAA
AATCCAAATACGTATCAAATGTCGGAGATGCGTGATAGTTACAGCAGAGC
TCTTGCTGTTGACATTCGTTAGGGCATACTAGACGTGCACAGGGAAAGAA
GTGTCATGAATTTTAGATTCTATTAAAGAGTTTTTTATCAGTGTGGCTAA
AGAGATCACTCTGAAGAGGTGTAGCACCAGGTAGCACTTGGTTGCTATTT
TAGAAAGTCAGGGCCTTGTCAGATCCAGGAAAGGCCATCCCACCATGATG
GATTGCCAGCCCCATGCTGCTACTGTATGTTTGGAGGAGCAAGCAGAGGA
CAGTGTGGCTTCGGTGACAGGAGTGGCGTTAGCACAGGCCTGACCATATG
GACCCACATGGGAGGGAATTGGGCTTTTATTTTAAATTTGCGGAAGTCAT
GATAATACTCTTAATAAGAGGATTGTCTGATCCAGCCTTGGGAAGTAGGT
TTATTTGGTTGCGGCACTACTTGTAGGAATGTCCTTGCCCGGTTGTAGAA
TGACATGCAATCCCTGTTTCTCACCAAGGAAGTCTTTGGATTGGCCTTTT
TGGGTACACCTTTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no298_e14.g1 MSMg01no298_e14.g1 CHROMAT_FILE:
MSMg01no298_e14.g1 PHD_FILE: MSMg01no298_e14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:56 2005
         (247 letters)



>mm_chr17_45527493_45528139
          Length = 647

 Score =  453 bits (234), Expect = e-132
 Identities = 243/246 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggctggtttagaacatacagtcctgactctggcttggaatgtgaagtgatcctcccgc 60
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 558 caggctggtttagaacatacagtcctgagtctggcttggaatgtgaagtgatcctcccgc 499

                                                                       
Query: 61  ctcacctcctgagtgctgggattacaggtatgagttgctgtatgacgtctggtgaaaatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ctcacctcctgagtgctgggattacaggtatgagttgctgtatgacgtctggtgaaaatc 439

                                                                       
Query: 121 caaatacgtatcaaatgtcggagatgcgtgatagttacagcagagctcttgctgttgaca 180
           |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 caaatatgtatcaagtgtcggagatgcgtgatagttacagcagagctcttgctgttgaca 379

                                                                       
Query: 181 ttcgttagggcatactagacgtgcacagggaaagaagtgtcatgaattttagattctatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 ttcgttagggcatactagacgtgcacagggaaagaagtgtcatgaattttagattctatt 319

                 
Query: 241 aaagag 246
           ||||||
Sbjct: 318 aaagag 313


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)