BAC Information

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BAC

Clone NameMSMg01-298P22
Chromosome17 (Build37)
Map Location 35,081,368 - 35,081,619
singlet/doubletsinglet
Overlap genenone
Upstream geneWdr46, B3galt4, Rps18, Vps52, EG630499, LOC100042989, AA388235, H2-K1, LOC654352, Ring1, H2-Ke6, Slc39a7, Rxrb, Col11a2, LOC672505, H2-Pa, H2-Oa, Brd2, LOC100043003, LOC100043522, H2-DMa, H2-DMb2, H2-DMb1, Psmb9, Tap1, Psmb8, Tap2, H2-Ob, H2-Ab1, H2-Aa, H2-Eb1, H2-Eb2, H2-Ea, Btnl2, LOC100038862, LOC667442, BC051142, EG632126, Btnl5, LOC624681, Btnl7, Notch4, Gpsm3, Pbx2, Ager, Rnf5, Agpat1, Egfl8, Ppt2, Prrt1, Fkbpl, Crebl1, Tnxb, EG632302, C4b, Stk19-ps1, Skiv2l-ps1, LOC100043024, Cyp21a2-ps, Cyp21a1, C4a, Stk19, Dom3z, Skiv2l, Rdbp, Cfb, C2, Zbtb12, Ehmt2, Slc44a4, Neu1
Downstream gene1110038B12Rik, LOC667548, Hspa1b, Hspa1a, Hspa1l, Lsm2, Vars, D17H6S56E-3, Ng23, Msh5, Clic1, Ddah2, AU023871, G6b, Ly6g6c, Ly6g6d, Ly6g6e, Bat5, Ly6g5c, Ly6g5b, Csnk2b, Bat4, D17H6S53E, Apom, LOC100043621, Bat3, Bat2, Aif1, EG667612, Lst1, Ltb, Tnf, Lta, Nfkbil1, Atp6v1g2, Bat1a, H2-D1, H2-Q1, EG667636, LOC100043066, H2-Q2, EG625285, LOC436493, H2-Q8, EG667662, H2-Q6, H2-Q7, EG667669, H2-Q10, Pou5f1, Tcf19, Cchcr1, Psors1c2, Cdsn, LOC674169, 2300002M23Rik, LOC672682, Dpcr1, EG433102, Vars2, Gtf2h4, Ddr1, LOC100043663, Ier3, Flot1, Tubb5, Mdc1, Nrm, 2310014H01Rik, Dhx16, 2310061I04Rik, 2610110G12Rik, Mrps18b, LOC100043673, Ppp1r10, LOC100043674, LOC667766
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-298P22.T7 (MSMg01no298_p22.b1)MSMg01-298P22.TJ (MSMg01no298_p22.g1)
ACCAG425890AG425891
length753752
length of high quality
(start - end)
---251 (101 - 351)
definitionCHROMAT_FILE: MSMg01no298_p22.b1 PHD_FILE: MSMg01no298_p22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:35:47 2005CHROMAT_FILE: MSMg01no298_p22.g1 PHD_FILE: MSMg01no298_p22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:35:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAAAATCCGCGGA
ATGCAATGATCCTTTCCAAACCCCGACTTATACTGACAAACGTATCATAA
TCTGCAGTCGACCATCGAGAAATCCCAATATACATCGGACATACAACCCC
CCACCGAAATAGCCTCACTACAAGAGACATTCCCGCCCTGATGXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCC
CTT
CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACCTGCACATACCACACACACACACA
ATCTAAAAAATAAAATGACTTTTAAGATTGCTATCAGGAGACAGGGTGTG
GCTTATATGGGAGGTCTTGGGCTCAATTCCCAGAAGCGGGGGTTGGGAGG
AATAAAAATGTGACTAGAAATTCCAGAATATAAATAAGTATACAGGGAAG
TGACTCACAAGACTCCACACCTAGCTGAGGAGCTATTGGTAACAGAAGGC
TGCTAGGGCATAGAGAATCAGCCTACTGATGTGTGTGTGTGTTCATATGG
GGACTTGTGTAAGTCAGAGGACAAATTAGCGATCAGATCTCTTCTCCCAC
CATGAGGGTCTTATGGATTGAACTAAAGTCTCAGGTGTGGAGGCAAATGC
CTTTACCAGCTGAGCCATCTTACCTACCCAAAAGGAGTATGCCCTTAAAA
AGGTGCTGCCCAAGCTGAGCAGTGTGGTGCACACCTTTAATCCCAGGACT
CTGGAGGCAGAGGCAGCGGATTTCTGAATTTGAGGTCTACAGAGTGAGCT
CCAGGACAGCCAGGGCTACACGGAGAAAGCCTGTCTCGAAAAACCAATGC
TAATCATAGGAGAAGCGGGAGGTACGCAGCTGTGGGGATCTGGGCTGAGT
TGGATCATGATGGAGACAGGATGAGACTAGATTGTATGCAACTATGGACA
TC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no298_p22.g1 MSMg01no298_p22.g1 CHROMAT_FILE:
MSMg01no298_p22.g1 PHD_FILE: MSMg01no298_p22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:47 2005
         (251 letters)



>mm_chr17_35081279_35081930
          Length = 652

 Score =  418 bits (216), Expect = e-121
 Identities = 243/252 (96%), Gaps = 1/252 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atctaaaaaataaaatgacttttaagattgctatcaggagaca-gggtgtggcttatatg 59
           ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct: 341 atctaaaaaataaaatgacttttaaaattgctatcaggagacaggggtgtggcttatatg 282

                                                                       
Query: 60  ggaggtcttgggctcaattcccagaagcgggggttgggaggaataaaaatgtgactagaa 119
           |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 281 ggaggtcttgggctcaattcccagcagtgggggttgggaggaataaaaatgtgactagaa 222

                                                                       
Query: 120 attccagaatataaataagtatacagggaagtgactcacaagactccacacctagctgag 179
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 221 attccagaatataaataagtacacagggaagtgactcacaagactccacacctagctgag 162

                                                                       
Query: 180 gagctattggtaacagaaggctgctagggcatagagaatcagcctactgatgtgtgtgtg 239
           ||||||||||||||||||||||| ||||| |||||||||||||||||  |||||||||||
Sbjct: 161 gagctattggtaacagaaggctggtagggtatagagaatcagcctacaaatgtgtgtgtg 102

                       
Query: 240 tgttcatatggg 251
           ||||||||||||
Sbjct: 101 tgttcatatggg 90


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 251
Length of database: 652
Length adjustment: 9
Effective length of query: 242
Effective length of database: 643
Effective search space:   155606
Effective search space used:   155606
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)