CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAATCTA
AAATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAG
ATAGATAGATAGATAATGGCTCCTTCAACATTCTTCTGACCTGTGTTCTG
GCACATGCATGAATGCATGCACGTGTGTGCATGTGTGCTCACTCACCCCT
CCCACATTTAAAACACAACAATAATAAAATTCAGCCTCACTCCCCCAATA
AAGGAAAACTCACCCTAACTGGAGCCTTAGAACTCACGGTTTTCAAAGGC
AATTTAGAGAGAGTCTTATCTCTGGAAATGGAGCTCAACAAAGACACATG
ACTTACAGGTTTCTAACTCATCTCTCTCTCTCCTGAAGCTTAAACAGAAA
TGTCCAGGTCCTGGCTCAGTTTTTCTGGGGTTAGACAATATCCTAGCAAA
ATTCAGAGCCATACAGTAAAATAATTATTTTTCCAAAGAAGGAAATAACT
AATTCAGTAATAACTAATTTTCTAGAGGAGGAAATAATCAATACAGTAAT
AACTCATTTTCAAGAGGAAGAAATAATACAGTAAGAATTGATGTAAAAAT
CATTTTACACTGAATTATGCATGGAATCTTTAAAAATTAAAACAAAATTT
TCAAGGAG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCACAGGAAGAATCCACGGTGAGAT
GTCCTACAGACCCCCAAACATTACACACACTGCCATTGGTTATCTGCCAG
AAGATCATATTGCTGAAGACACTCACACACTTGAGTCACAGGACATGGGA
AAAAGAAATTAAACTGGTTCCAACCTGGAAGCTTCATCCCTAGTTAACAG
CTTTCACTGTGAGAGAAGGTTCTTCATACAGTGTCGAGAGAAAATATTCA
ACAGTCACACCCAGGTGTGTACCTAGAAAGCTACAGTAACAACTGACCTG
GCAAGATGTGCCAGTGGGCATCCACTGGTGCACTAGTGACGGCAACATTA
TGGCAATAACCAGCCCCCACTTTCTGCTTAAATTAAAGCTTGCTCAGGCA
GCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAAC
AGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGAGTACTACT
CAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAATGGATGGAC
CTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAGGAACTCACA
CAATATGTACTCACTGATAAGTGGATATTAGCCCCAAACCTAGGATTCCC
AAGATATA

Query= MSMg01no299_c13.b1 MSMg01no299_c13.b1 CHROMAT_FILE:
MSMg01no299_c13.b1 PHD_FILE: MSMg01no299_c13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:00 2005
         (660 letters)



>mm_chr17_50465403_50466464
          Length = 1062

 Score = 1077 bits (557), Expect = 0.0
 Identities = 588/603 (97%), Gaps = 9/603 (1%)
 Strand = Plus / Minus

                                                                        
Query: 67   atagatagatagatagatagatagatagatagatagatagatagatagatagataatggc 126
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1048 atagatagatagatagatagatagatagatagatagatagatagatagatagataatggc 989

                                                                        
Query: 127  tccttcaacattcttctgacctgtgttctggcacatgcatgaatgcatgcacgtgtgtgc 186
            |||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||
Sbjct: 988  tccttcaacattcttctgacctgtgttctggcacatgcatgagtgcatgcacatatgtgc 929

                                                                        
Query: 187  atgtgtgctcactcacccctcccacatttaaaacacaacaataataaaattcagcctca- 245
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| 
Sbjct: 928  atgtgtgctcactcacccctcccacatttaaaacgcaacaataataaaattcagcctcac 869

                                                                        
Query: 246  ------ctcccccaataaaggaaaactcaccctaactggagccttagaactcacggtttt 299
                  ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 868  tcccccctcccccaataaaggaaaactcaccctaactggagccttagaactcacggtttt 809

                                                                        
Query: 300  caaaggcaatttagagagagtcttatctctggaaatggagctcaacaaagacacatgact 359
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808  caaaggcaatttagagagagtcttatctctggaaatggagctcaacaaagacacatgact 749

                                                                        
Query: 360  tacaggtttctaactca--tctctctctctcctgaagcttaaacagaaatgtccaggtcc 417
            | |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 748  ttcaggtttctaactcatctctctctctctcctgaagcttaaacagaaatgtccaggtcc 689

                                                                        
Query: 418  tggctcagtttttctggggttagacaatatcctagcaaaattcagagccatacagtaaaa 477
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688  tggctcagtttttctggggttagacaatatcctagcaaaattcagagccatacagtaaaa 629

                                                                        
Query: 478  taattatttttccaaagaaggaaataactaattcagtaataactaattttctagaggagg 537
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628  taattatttttccaaagaaggaaataactaattcagtaataactaattttctagaggagg 569

                                                                        
Query: 538  aaataatcaatacagtaataactcattttcaagaggaagaaataatacagtaagaattga 597
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568  aaataattaatacagtaataactcattttcaagaggaagaaataatacagtaagaattga 509

                                                                        
Query: 598  tgtaaaaatcattttacactgaattatgcatggaatctttaaaaattaaaacaaaatttt 657
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508  tgtaaaaatcattttacactgaattatgcatggaatctttaaaaattaaaacaaaatttt 449

               
Query: 658  caa 660
            |||
Sbjct: 448  caa 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 56
Number of extensions: 17
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1062
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1052
Effective search space:   683800
Effective search space used:   683800
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)