Query= MSMg01no299_j15.b1 MSMg01no299_j15.b1 CHROMAT_FILE:
MSMg01no299_j15.b1 PHD_FILE: MSMg01no299_j15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:34 2005
(320 letters)
>mm_chr17_21729303_21730022
Length = 720
Score = 574 bits (297), Expect = e-168
Identities = 309/313 (98%)
Strand = Plus / Plus
Query: 5 gaattccttaatgtttaactaggattgaggccaagtgagcttgtcccttctatgttagca 64
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 205 gaattccttaatgtttaactaggattgaggccaagtgagcttatcccttctatgttagca 264
Query: 65 tgtttcttggtgttgtccttgttctgttcatgtttagacaatcacggttttaggatttca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgtttcttggtgttgtccttgttctgttcatgtttagacaatcacggttttaggatttca 324
Query: 125 ggcattttctgacatttctaggagacataatctcggagcaaacatcctgctcctctggcc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggcattttctgacatttctaggagacataatctcggagcaaacatcctgctcctctggcc 384
Query: 185 cttaaaatatcttcctcccctccccaccaccaccaccaccatccccaaacttgccctaag 244
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 385 cttaaaatatcttcctcccctccccaccaccaccaccaccatccccaaacatgccctaag 444
Query: 245 ccctctttttcggtgatctgtgaactttagatgcttgacttgtgttacttatgtgtcagt 304
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 445 ccctctttttcggtgatctgtgaactttagatgcaggacttgtgttacttatgtgtcagt 504
Query: 305 tgagactgactgt 317
|||||||||||||
Sbjct: 505 tgagactgactgt 517
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space: 221121
Effective search space used: 221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no299_j15.g1 MSMg01no299_j15.g1 CHROMAT_FILE:
MSMg01no299_j15.g1 PHD_FILE: MSMg01no299_j15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:34 2005
(624 letters)
>mm_chr17_21889875_21890898
Length = 1024
Score = 640 bits (331), Expect = 0.0
Identities = 352/363 (96%), Gaps = 8/363 (2%)
Strand = Plus / Minus
Query: 1 agttctaggttttttcctttataagatagatcccgccatataccttacaaatgcagtccg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 agttctaggttttttcctttataagatagatcccgccatataccttacaaatgcagtccg 500
Query: 61 aaagtgtccttgtgggaaggatggggcaaagatgcatattgatattgaagcaggaactac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 aaagtgtccttgtgggaaggatggggcaaagatgcatattgatattgaagcaggaactac 440
Query: 121 ataaacatcctgtatcctttcatatgagttccttgaatgtgccctgattttgctatctac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ataaacatcctgtatcctttcatatgagttccttgaatgtgccctgattttgctatctac 380
Query: 181 cacacttaataaaactaatattctgacaccactgaatgctgattacatagacgctctttg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 cacacttaataaaactaatattctgacaccactgaatgctgattacatagacgctctttg 320
Query: 241 atctgtgctggcattgttctactgacaagaataatcaactcacgcatc----tttttgtt 296
|||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 319 atctgtgctggcattgttctactgacaagaataatcaactcacgcaccgaaa----tgtt 264
Query: 297 aaagccaccaacttactaaaatgatcaaagagtagttttcattgtgtgtgttttactgaa 356
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 aaagtcagcaacttactaaaatgatcaaagagtagttttcattgtgtgtgttttactgaa 204
Query: 357 agg 359
|||
Sbjct: 203 agg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1024
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1014
Effective search space: 622596
Effective search space used: 622596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
