BAC Information

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BAC

Clone NameMSMg01-300D12
Chromosome17 (Build37)
Map Location 10,882,230 - 11,039,505
singlet/doubletdoublet
Overlap genePacrg, Park2
Upstream geneQk, LOC675815
Downstream geneLOC100041113
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-300D12.T7 (MSMg01no300_d12.b1)MSMg01-300D12.TJ (MSMg01no300_d12.g1)
ACCAG426766AG426767
length751744
length of high quality
(start - end)
318 (41 - 358)115 (123 - 237)
definitionCHROMAT_FILE: MSMg01no300_d12.b1 PHD_FILE: MSMg01no300_d12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:37:19 2005CHROMAT_FILE: MSMg01no300_d12.g1 PHD_FILE: MSMg01no300_d12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:37:19 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,039,192 - 11,039,505)(10,882,230 - 10,882,344)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ACACACAGTTATCAATCCTGAATCACTAATATTTATCATCCTATCATTTC
TTAAAGACAAAAATTTTATTCCCTCCTCCAAAACCTAATATTAAAAGGCA
CCACTATCCCTTCTCTGATCAATCTAACTTGCATACTTTCAACTCAGTCA
GTTATAAAATGCTTAAACTGACAGAGAAGCTAGAAATATTCCTAATAAAC
GATTATGCAAATAAGTATGACAATGAGTTGACCCAACAGAAAAGGTTCCT
GAAAGTTAGACTTCAGGAAACTGTTCCCCCACATCTAAACAAAATAAAGC
TCATGGCATTATTCNTGTGCCCCACCCCCCCTATCAACTAAAGTTCTATA
AGCTAAAGTTATCTGAGAGGATGGAAATATAAATTAAAAAAAAAAGTCTC
CGTTAAGATTAGGTTGCTTTTGCTTTTGCTTTTCTTCCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTC
CTTGCACAAAGGACGCTTACCTGCGAACGTAGTGTAATGAGTGAGTACCT
GTATCAGGATCACACCCTGACTTATGATATCACACTCTTGACCCCATTTA
TAATGTTATCGCGCCCAATAACATTACAACGATTCATCACCCATATTCTT
TTTTCTTTTTTAGCACTCTTGCAATACATTGCGGAATATCAACCACAAAC
T
GACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCCAGTCCTGCGCTTCTTCTTAACCTGCTC
TTATCCCCGTCCCTATTAGCCTCTAAGATGAGATGTGTGAAGGACCTGCT
CTCCGGAGTCTTTTCCACTCTGCTACCCCATGGCTGCAGGTCCATCATCC
AGGGAGAGTAGGAAATCTGTTATATGGAGTGTTTACATGCCAGTAGAATT
AGCAACAAACTTAAATCATGGGTTTGGCCCCACTTCATTTGAGAAAATAC
TTTGACATTAGAGTTCTGATTTGCTTCTCCAGCTTTTAGAAAATATAATT
ATCACCAATATCNATTTCTTTCGCTAGCTNTCCCTTTAAGGGAAAAGACT
GACAGCAGGCTCTTTCCCCCTTCTGCAAAATAAAAACTTATTTGTAATTA
TGAATTTACAACACCCTTAAATATATATACACTTACAGCTATCAGACAGT
GCTTGATCACTTAACCAACAGAAAATATTGACTTTCTCAGACATGTCTAA
CTCATTGAATTGCAAAACCTCCCCCATTACCAAAATTATGATTATTCTAT
TACAGTAACAAACATTTGAGGAAATACTCTCTTCTCGACCTTTATCTGAT
TCGCGATTGACGATCCGCTATGCCCATGACACACTCCATAACTTGATATA
TTGATTTGCCCCACCATACCGATTCCGATATCGGCAGGACGACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no300_d12.b1 MSMg01no300_d12.b1 CHROMAT_FILE:
MSMg01no300_d12.b1 PHD_FILE: MSMg01no300_d12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:37:19 2005
         (318 letters)



>mm_chr17_11038988_11039705
          Length = 718

 Score =  576 bits (298), Expect = e-169
 Identities = 310/314 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacacacagttatcaatcctgaatcactaatatttatcatcctatcatttcttaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 gaattcacacacagttatcaatcctgaatcactaatatttatcatcctatcatttcttaa 459

                                                                       
Query: 65  agacaaaaattttattccctcctccaaaacctaatattaaaaggcaccactatcccttct 124
           |||||||||  | ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 agacaaaaaaatcattacctcctccaaaacctaatattaaaaggcaccactatcccttct 399

                                                                       
Query: 125 ctgatcaatctaacttgcatactttcaactcagtcagttataaaatgcttaaactgacag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 ctgatcaatctaacttgcatactttcaactcagtcagttataaaatgcttaaactgacag 339

                                                                       
Query: 185 agaagctagaaatattcctaataaacgattatgcaaataagtatgacaatgagttgaccc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 agaagctagaaatattcctaataaacgattatgcaaataagtatgacaatgagttgaccc 279

                                                                       
Query: 245 aacagaaaaggttcctgaaagttagacttcaggaaactgttcccccacatctaaacaaaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 aacagaaaaggttcctgaaagttagacttcaggaaactgttcccccacatctaaacaaaa 219

                         
Query: 305 taaagctcatggca 318
           ||||||||||||||
Sbjct: 218 taaagctcatggca 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no300_d12.g1 MSMg01no300_d12.g1 CHROMAT_FILE:
MSMg01no300_d12.g1 PHD_FILE: MSMg01no300_d12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:37:19 2005
         (115 letters)



>mm_chr17_10882030_10882544
          Length = 515

 Score =  207 bits (107), Expect = 2e-58
 Identities = 113/115 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctaagatgagatgtgtgaaggacctgctctccggagtcttttccactctgctaccccatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctaagatgagatgtgtgaaggacctgctctccggagtcttttccactctgctaccccatg 260

                                                                  
Query: 61  gctgcaggtccatcatccagggagagtaggaaatctgttatatggagtgtttaca 115
           |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct: 261 gctgcaggtccatcatccagggagagaaggaaatctgttagatggagtgtttaca 315


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 115
Length of database: 515
Length adjustment: 8
Effective length of query: 107
Effective length of database: 507
Effective search space:    54249
Effective search space used:    54249
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)