Query= MSMg01no300_d24.b1 MSMg01no300_d24.b1 CHROMAT_FILE:
MSMg01no300_d24.b1 PHD_FILE: MSMg01no300_d24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:37:22 2005
(291 letters)
>mm_chr17_46861800_46862492
Length = 693
Score = 489 bits (253), Expect = e-143
Identities = 281/293 (95%), Gaps = 5/293 (1%)
Strand = Plus / Plus
Query: 1 agggggtgtcgtcgtcgt-----cgtcccgtcccccccccctccccccgggagtggcccc 55
|||||||||||||||||| |||||||||||||||||| ||||||||||||||| |
Sbjct: 198 agggggtgtcgtcgtcgtcgtcccgtcccgtcccccccccccccccccgggagtggctct 257
Query: 56 cctacctaggcatagactgcagcctctgtacttcagctagggctggggctctggccttag 115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 cctacctaggcatagactgcagcctctgtacttcagctagggctggggctctggccttag 317
Query: 116 tcttcctttccaccccttagggctagagctgcggagctcagcactgctgctcaccatgga 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 tcttcctttccaccccttagggctagagctgcggagctcagcactgctgctcaccatgga 377
Query: 176 ggacctgttgcaggccgcagcccggctgcagccctcagtcagtgagcaggagctgttgcg 235
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 ggacctgttgcaggctgcagcccggctgcagccctcagtcagtgagcaggagctgttgcg 437
Query: 236 atacaagcgcatccaacgtttgtttgccgcctgctaggagctgcctgcctgcc 288
|||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 438 atacaagcgcatccaacgcaagtttgccgcctgctaggagctgcctgcctgcc 490
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 693
Length adjustment: 9
Effective length of query: 282
Effective length of database: 684
Effective search space: 192888
Effective search space used: 192888
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no300_d24.g1 MSMg01no300_d24.g1 CHROMAT_FILE:
MSMg01no300_d24.g1 PHD_FILE: MSMg01no300_d24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:37:22 2005
(247 letters)
>mm_chr17_47028503_47029149
Length = 647
Score = 462 bits (239), Expect = e-135
Identities = 245/247 (99%)
Strand = Plus / Minus
Query: 1 tccggacatccttattatttattgaagacccgctttatcactccctgtgatcaacggtaa 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 447 tccggacatccttattatttattgaagacccactttatcactccctgtgatcaacggtaa 388
Query: 61 gaacagcaaatccctcaaagctcctccattctccccctaattcttcacgctgtcatactc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 gaacagcaaatccctcaaagctcctccattctccccctaattcttcacgctgtcatactc 328
Query: 121 aaagggaggcaggggaaggccaaaccagcaaaagtccgttacactgctatgaatttaata 180
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 327 aaagggaggcaggggaaggccaaaccagcaaaagtctgttacactgctatgaatttaata 268
Query: 181 ggactcacaggaggggagtttcaacaatttctaacccctatcaccgcaaacataagacaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 ggactcacaggaggggagtttcaacaatttctaacccctatcaccgcaaacataagacaa 208
Query: 241 tatcagg 247
|||||||
Sbjct: 207 tatcagg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space: 151844
Effective search space used: 151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
