CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCATCATTTACCCCAAAATAGCACTTGGTAAGTATTTCTAACATTCT
CTGTATATAATTTGGCTTAAGAACTGCCACAAGCTCTCCCTTTCATTGCC
TTTTTATGCATTATATGCCGTAGGCAAACCATGCCCTGACACTGTGGGGT
CTGACCTGAGACTACAAGGCTAATATTGTATGTCAAAATACTTAAAAATT
ATATACTATATATAAAAGAATGGAAATCACACATTAGAATGAAAATATAT
TTTTTTCTATCATTCTAAACGTACATAGATATGGTCAAACCAGGGTGATA
GATATTGGTTGTTATTTTTTATTAAAAATTCATACAATCTATTCTGATTA
TGGCTCCCCTTCATTTTCAACATCCTCTCCACTCTCCCACCCACCATGCA
TGCATTCTTTCTCTTTCTGGAAAATGGTCAAGTAAAAGACAGCAAACAAA
ACAGAATGATAAATAAATAAATAAGACAGGGAAGAAGAAGAAACACACAT
AAACAGAGAAAAACCTATGAAAATACAAAGTCACAAACAATAATATGTAA
GCAAGAGATCATGAGTCAAAAAATAAAGCCCAAAGCAATATGAGTTAAAA
ACAAAAAACAAAACCAACCAACCAACCAACCAAACAACAACAAACAAACA
AAACCAAAATCTACAAAATACTACTGGGTCCATTTTATGTTAG

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTATATATAAATATATATTTCATACATA
TATGAAAAGTCTTATGAGAAATACAAGACAATTTAAAGTTTTGTCATTAG
TAACAATTTGATACATATGATTAAGTATCAGAATAATTGATGAACCTAGT
CAATGCTCTTTTATTTCAGAGGATAGAGAAATCAATGTGAATTAATTATT
TTGAAAAGCTTCATTGAAGATCTGGTATTTGCACTTGTCCTTGAAAGATG
GGCACAACTTCAATATATTTGCCACACCAAAGACCTCTATTGATTTAATT
TAGATGCTGATTTATTATGCCACCCACCCTCTTTTCAGGTTTCATGCAAG
GATAACCTGGGGAATGAGGTGGCATTATGAGAGAAAGATGTCATGCACGC
TGGCTTGAGAGGAAGTAGAGACTCTAGTTTGGACTTTGCAAAATGTGATG
TCTGCTACCGCTCTAGAGGTGGTGGGACTTAGGAGAAAGGAGCCAATGAG
TGAGGTGGACTGAAGTCTCCTGCAATAGCCAACTTTATTCATAACATCAG
ATAATTTATACTCTGGGGTCAGGAAAGGTCACCTGAGTGAAGTTCTCGTG
GGATCAAGCTGTATCCAATGACAAGGACAAGCTTCGTGTGGCACAAACGT
GTTTTACCATCGGTATAGAGAAAGAATGGTTTAAGCATTTAAGTGA

Query= MSMg01no300_e02.b1 MSMg01no300_e02.b1 CHROMAT_FILE:
MSMg01no300_e02.b1 PHD_FILE: MSMg01no300_e02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:37:22 2005
         (621 letters)



>mm_chr17_63331706_63332726
          Length = 1021

 Score = 1178 bits (609), Expect = 0.0
 Identities = 615/617 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccatcatttaccccaaaatagcacttggtaagtatttctaacattctctgtatat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccatcatttaccccaaaatagcacttggtaagtatttctaacattctctgtatat 264

                                                                       
Query: 65  aatttggcttaagaactgccacaagctctccctttcattgcctttttatgcattatatgc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aatttggcttaagaactgccacaagctctccctttcattgcctttttatgcattatatgc 324

                                                                       
Query: 125 cgtaggcaaaccatgccctgacactgtggggtctgacctgagactacaaggctaatattg 184
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cgtaggcaagccatgccctgacactgtggggtctgacctgagactacaaggctaatattg 384

                                                                       
Query: 185 tatgtcaaaatacttaaaaattatatactatatataaaagaatggaaatcacacattaga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tatgtcaaaatacttaaaaattatatactatatataaaagaatggaaatcacacattaga 444

                                                                       
Query: 245 atgaaaatatatttttttctatcattctaaacgtacatagatatggtcaaaccagggtga 304
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atgaaaatatttttttttctatcattctaaacgtacatagatatggtcaaaccagggtga 504

                                                                       
Query: 305 tagatattggttgttattttttattaaaaattcatacaatctattctgattatggctccc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tagatattggttgttattttttattaaaaattcatacaatctattctgattatggctccc 564

                                                                       
Query: 365 cttcattttcaacatcctctccactctcccacccaccatgcatgcattctttctctttct 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cttcattttcaacatcctctccactctcccacccaccatgcatgcattctttctctttct 624

                                                                       
Query: 425 ggaaaatggtcaagtaaaagacagcaaacaaaacagaatgataaataaataaataagaca 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ggaaaatggtcaagtaaaagacagcaaacaaaacagaatgataaataaataaataagaca 684

                                                                       
Query: 485 gggaagaagaagaaacacacataaacagagaaaaacctatgaaaatacaaagtcacaaac 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gggaagaagaagaaacacacataaacagagaaaaacctatgaaaatacaaagtcacaaac 744

                                                                       
Query: 545 aataatatgtaagcaagagatcatgagtcaaaaaataaagcccaaagcaatatgagttaa 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 aataatatgtaagcaagagatcatgagtcaaaaaataaagcccaaagcaatatgagttaa 804

                            
Query: 605 aaacaaaaaacaaaacc 621
           |||||||||||||||||
Sbjct: 805 aaacaaaaaacaaaacc 821


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1021
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1011
Effective search space:   617721
Effective search space used:   617721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no300_e02.g1 MSMg01no300_e02.g1 CHROMAT_FILE:
MSMg01no300_e02.g1 PHD_FILE: MSMg01no300_e02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:37:22 2005
         (288 letters)



>mm_chr17_63510277_63510964
          Length = 688

 Score =  524 bits (271), Expect = e-153
 Identities = 283/287 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatatataaatatatatttcatacatatatgaaaagtcttatgagaaatacaagacaatt 60
           |||||| |||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct: 487 tatatacaaatatatatttcatacacatatgaaaagtcttatgagaaatataagacaatt 428

                                                                       
Query: 61  taaagttttgtcattagtaacaatttgatacatatgattaagtatcagaataattgatga 120
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 427 taaagttttgtcattagtaacaatttgatacatatgattacgtatcagaataattgatga 368

                                                                       
Query: 121 acctagtcaatgctcttttatttcagaggatagagaaatcaatgtgaattaattattttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 acctagtcaatgctcttttatttcagaggatagagaaatcaatgtgaattaattattttg 308

                                                                       
Query: 181 aaaagcttcattgaagatctggtatttgcacttgtccttgaaagatgggcacaacttcaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 aaaagcttcattgaagatctggtatttgcacttgtccttgaaagatgggcacaacttcaa 248

                                                          
Query: 241 tatatttgccacaccaaagacctctattgatttaatttagatgctga 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 tatatttgccacaccaaagacctctattgatttaatttagatgctga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)