BAC Information

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BAC

Clone NameMSMg01-300F16
Chromosome17 (Build37)
Map Location 74,708,138 - 74,708,420
singlet/doubletsinglet
Overlap gene2810410M20Rik
Upstream geneCapn13, LOC100043666, Galnt14, Ehd3, LOC240160, Xdh, Srd5a2, Memo1, EG668716
Downstream geneLOC668773, LOC668775, Spast, Slc30a6, Nlrc4, LOC100043883, LOC624159, Yipf4, Birc6, Ttc27, LOC100043672, Ltbp1, EG621988
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-300F16.T7 (MSMg01no300_f16.b1)MSMg01-300F16.TJ (MSMg01no300_f16.g1)
ACCAG426865AG426866
length740739
length of high quality
(start - end)
318 (44 - 361)285 (76 - 360)
definitionCHROMAT_FILE: MSMg01no300_f16.b1 PHD_FILE: MSMg01no300_f16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:37:29 2005CHROMAT_FILE: MSMg01no300_f16.g1 PHD_FILE: MSMg01no300_f16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:37:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTGCCGCTTATCAGGAAGAGTACTGGTTTTTGGAGAAGCAAAGGCAGG
GAGGATGTCTTGAGCTATCTCCTCAGGATGTCTCCATTAAGGGGGAGTTT
CACGGGTAGTGCCATTCTAACGCTAGGGGAGTGGCCAGGGAGGAGGAGGA
GGGAGCCCAGAGCTTGACGCAGGAGGACACAGCACAGAAACCAGCTGTCT
CTGTATCTTGCTTGCTGCAGGCTGGAAGGAGAATGGGAGGTTCTGGTGAG
GGGCAGGGAACCCAGAGGCTAACTGACTGTACACAACACTGAAGTCTCTC
TAGTATCAGTTTTTTTGGGCCCACCACACTACAGCAAACCAATGGTCAAC
ATCAAACTAAATGGAGAGAGACTCAAAGCAAACCCATTAATATCAGGGAC
AAGACAAGGCTGCCCACTCTCTCCCTACCTATTGAACATAGCACTCAAAG
TCCTAGCCAGAGCAATTAGACTACAAAGAGATCACAGGGATACACACTGG
TAAGGATGAAGTCAAGATATCACTATTTAGAGATGGTATGATAGCATACA
TCAGTGACCCCCATAACTCTACCAGAGAGCTCCTAAACCCGATTAACCAT
TTCTGAAAACTGGCTGGATATACAATTATCTATCACACATCATTTTCCGC
CTTCTATTCATACGATAACTGCGCCGAGTATGAAATTAGG
CATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTGATTCTCCTGCCTCCACCTTCCA
AGTGCTGGGTTCACAGGTATGTCCTTCCATGTCCAGTTAGTGCTTCAGTT
GAACCCAGGACTTGGTGCATCCTAGACACATGCTGCCTGCGTTGTAGCCT
GTCCCTTGGACTGCTGTTTCTTATTGGAGGCGTTCTAATATCGTGTAAAT
GAGTAGCCCTTTTTGGTGTGAATATACTAAGACTTTGATAAGCTAGGACT
GCGTCCTTTACTACAACTAACACCAATTTGTTTTGAAATGAATTAACTTA
CTTTATGTTTATTATTGTGCCCCCCCCCCCCAGTCTGTACCAAGGAGGTC
AGCAGCGCATCAGATCCCTTGACACAACAGTTAAAGGCATTTGTTAAGTC
TCCATGTGAGTGCCAGGAATCAAATCCAGGCCTTCAAGAACTGCAGTCAC
CCTTAACTGCAGAGCCATCTCTCCAGTCCCAATATGAAGTTTTTCATGAC
TAAAATATGTTTTTACTGCGTTTTTACTTGTGTGTCTGTGCATACGCACG
CGTAAAAATCATGGATCTTTCTTCACAACATCTCATGCGTCACGCGTGGT
CGCATTGTCCAACAATTCTCCATTATCACTTGTATTTGGAACTTTTATGT
GATCCCCGCCCCTGTTGTTTCTCACTTTGTCCCTACCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no300_f16.g1 MSMg01no300_f16.g1 CHROMAT_FILE:
MSMg01no300_f16.g1 PHD_FILE: MSMg01no300_f16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:37:29 2005
         (285 letters)



>mm_chr17_74707829_74708513
          Length = 685

 Score =  493 bits (255), Expect = e-144
 Identities = 276/283 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgattctcctgcctccaccttccaagtgctgggttcacaggtatgtccttccatgtcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 592 ctgattctcctgcctccaccttccaagtgctgggttcacaggtatgtacttccatgtcca 533

                                                                       
Query: 61  gttagtgcttcagttgaacccaggacttggtgcatcctagacacatgctgcctgcgttgt 120
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 532 gttagtgcttcagttgaacccaggacttggtgcatcctagacacatgccgcctgcgttgt 473

                                                                       
Query: 121 agcctgtcccttggactgctgtttcttattggaggcgttctaatatcgtgtaaatgagta 180
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 472 agcctgtcccttggactgctgtttcttattggaggcgttctaatagcgtgtaaatgagta 413

                                                                       
Query: 181 gccctttttggtgtgaatatactaagactttgataagctaggactgcgtcctttactaca 240
           |||||||| || |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 412 gcccttttgggggtgaatatacaaagactttgataagctaggactgcgtcctttactaca 353

                                                      
Query: 241 actaacaccaatttgttttgaaatgaattaacttactttatgt 283
           ||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 352 actaaaaccaatttgttttgaaatgaattaacttactttatgt 310


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)