Query= MSMg01no300_j23.b1 MSMg01no300_j23.b1 CHROMAT_FILE:
MSMg01no300_j23.b1 PHD_FILE: MSMg01no300_j23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:37:49 2005
(239 letters)
>mm_chr17_10352041_10352678
Length = 638
Score = 427 bits (221), Expect = e-124
Identities = 233/237 (98%), Gaps = 1/237 (0%)
Strand = Plus / Plus
Query: 1 tcagaaatcagggaacaaacaggacattatgaaaaagggacttgttacatagacaacaaa 60
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 201 tcagaaatcagggaacaaacaggacattatgacaa-gggacttgttacatagacaacaaa 259
Query: 61 aactgattggagaagagaagagcccagaaacaaccaacacagctgcagagtagctggcct 120
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 aactgattggagaaaagaagagcccagaaacaaccaacacagctgcagagtagctggcct 319
Query: 121 atcagaaccccaaatctccaagcaggtgtccctggagaaccttggaagtgattctagaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 atcagaaccccaaatctccaagcaggtgtccctggagaaccttggaagtgattctagaag 379
Query: 181 aaatgtaaatcactggattgcggatgcgtttcactgctgcgagggacattcccatga 237
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 380 aaatgtaaatcactggattgcggatgcgtttcactgctgtgagggacattcccatga 436
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 638
Length adjustment: 9
Effective length of query: 230
Effective length of database: 629
Effective search space: 144670
Effective search space used: 144670
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no300_j23.g1 MSMg01no300_j23.g1 CHROMAT_FILE:
MSMg01no300_j23.g1 PHD_FILE: MSMg01no300_j23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:37:49 2005
(263 letters)
>mm_chr17_10503892_10504554
Length = 663
Score = 501 bits (259), Expect = e-146
Identities = 262/263 (99%)
Strand = Plus / Minus
Query: 1 gattcttgtgaaagggtgttcctatctctggtggggtcacgacccacaggttgagaatct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 gattcttgtgaaagggtgttcctatctctggtggggtcacgacccacaggttgagaatct 467
Query: 61 ctgctctaaagacagccgattgtgagctgaggagtaggtgtgctgcattcagttactaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 ctgctctaaagacagccgattgtgagctgaggagtaggtgtgctgcattcagttactaca 407
Query: 121 tcctattccctataccagtttatggaggatgagtgactgttcatttgtaattttattaaa 180
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 tcctattccctatatcagtttatggaggatgagtgactgttcatttgtaattttattaaa 347
Query: 181 agaaactttgaaatctcagttctttgttagctgtgcaaagtaattttattacttagaatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 agaaactttgaaatctcagttctttgttagctgtgcaaagtaattttattacttagaatt 287
Query: 241 gtatgctaagaattgaacctaga 263
|||||||||||||||||||||||
Sbjct: 286 gtatgctaagaattgaacctaga 264
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 263
Length of database: 663
Length adjustment: 9
Effective length of query: 254
Effective length of database: 654
Effective search space: 166116
Effective search space used: 166116
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
