BAC Information

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BAC

Clone NameMSMg01-300N14
Chromosome17 (Build37)
Map Location 90,855,628 - 90,855,916
singlet/doubletsinglet
Overlap geneNrxn1
Upstream geneLOC100043906
Downstream geneEG668871, LOC668872, LOC627235
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-300N14.T7 (MSMg01no300_n14.b1)MSMg01-300N14.TJ (MSMg01no300_n14.g1)
ACCAG427220AG427221
length748747
length of high quality
(start - end)
598 (69 - 666)288 (72 - 359)
definitionCHROMAT_FILE: MSMg01no300_n14.b1 PHD_FILE: MSMg01no300_n14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:38:05 2005CHROMAT_FILE: MSMg01no300_n14.g1 PHD_FILE: MSMg01no300_n14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:38:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTCACCTGTTCCCTACAGAATGGCTGAGAAGCACCTGAAAAAATGTTCAG
CAACCTTAATCATCTTGGACCTGCAAATCAAAACAACCCTGAGATTCCAC
CTCAAACCAGTCAGAATGGCTAAGATCAAAAATTCACGTGACAGCAGATG
CTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATT
GCAAGCTTGTACAACCACTCTGGGAATCTGTCTGGCGGTTCCTCAAAAAA
TTGGACATAGTACTACTGGAGGATCCTGCAAAACCTCTCCTGGGCATACA
TCCAGAAGATGTTTCAACCGGTAAGAAGGACACATGCTCCACTATATTCA
TAGCAGCCTTGTTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCC
TTAACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAATGGAATA
CTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGGCAAATGGA
TGGACCTGGAGGGCATCATCCTAAGTGAGGTAACCCAATCACAAAAGAAT
TCACCACCTTTATAATTATTGTTATCAAGAGCAATGACTCCTGGAGCTGC
TACTTGATGCTAAATATATTCAGACTTATTTGGTCACTGCATTATTTAAT
TTGCATACTCTTGTCCTAGGAATGACATCACTGCTTTACAGTGAAGAA
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTTGATATCCCAATTTATTTACTGAAAGA
CAGTTAATTCACATCTTTTCCCTCTCTTCTCTCCCTCTTTTGTTCTCTGC
TTCCCTCTTCTACCTCTTCCTTGGCTGCTCATCCTGTTGCCTTCCTAGAC
TTTCAGTTCCCCTGACTTACACTGGCTCCTAGGAGTCACAATGTTGTAAT
GGAAAGGAGGGCTCTTTGTTATAAATAATGTGAGCAGTAAGCAGATCAAC
GGAACTGACGCTGACTGGATGGTGTCAAGCCTTTTTTAGCAGTTTGGTTT
TGAACACCTGNGTAGATCTCCCCCTGGCCACCCAAAAAAAAAGCAGAATT
CCTTCCCTTTTAAGAGCTCTAAAGACAAAGAATACTTTTATGCAGAGGGG
TAGGGGACAGTGCTTTTTGCCCAAGTGATTCACAGGCAAGGATCACCTGG
CTGAGAAGGGAGCGTTGCCTTTTACGCGTTTCCCGCATCGCGTCCACGTG
CCTCTATGATGTGCGGAGAATGCCATGGAGAGGCAAAGCGGGTGGGTTTT
TTTCGGAAAGCTAGACCAGCCTCCCTCCTTACATATGCTCGTCCTCTGCA
TTGCATCCGATCTTCGGCGATTTGCCGTTTGCACACTGCACACTTGCCTA
TAGCCCCTTGCTTCACCAGATTGTGTGGTTTTTCAGTCCTTTCATTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no300_n14.g1 MSMg01no300_n14.g1 CHROMAT_FILE:
MSMg01no300_n14.g1 PHD_FILE: MSMg01no300_n14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:38:05 2005
         (288 letters)



>mm_chr17_90855338_90856025
          Length = 688

 Score =  470 bits (243), Expect = e-137
 Identities = 277/289 (95%), Gaps = 2/289 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgatatcccaatttatttactgaaagacagttaattcacat--cttttccctctcttc 58
           |||||||||||||||||||||||||||||||||||||||||||  ||| ||  |||||||
Sbjct: 579 tttgatatcccaatttatttactgaaagacagttaattcacatcacttctctttctcttc 520

                                                                       
Query: 59  tctccctcttttgttctctgcttccctcttctacctcttccttggctgctcatcctgttg 118
           || ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 tcaccctcttttgttccctgcttccctcttctacctcttccttggctgctcatcctgttg 460

                                                                       
Query: 119 ccttcctagactttcagttcccctgacttacactggctcctaggagtcacaatgttgtaa 178
           |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 459 ccttcctagactttcagttcccctgacttacactggttcctaggagtcacagtgttgtaa 400

                                                                       
Query: 179 tggaaaggagggctctttgttataaataatgtgagcagtaagcagatcaacggaactgac 238
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 tgggaaggagggctctttgttataaataatgtgagcagtaagcagatcaacggaactgac 340

                                                            
Query: 239 gctgactggatggtgtcaagccttttttagcagtttggttttgaacacc 287
           ||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 339 gctgagtggacggtgtcaagccttttttagcagtttggttttgaacacc 291


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)