XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAG
TTTACTACCAGTAATAATTTCATTCTTCTTTATGAAAAAGCAAATCTCCA
ACATATACATATATATGCACATGTACACAAAACATACACACACATACATA
CACACTCATACACATACACACACATTCACACACATATATAAACTTATTTG
TATCAACAGGAATAGGAATGTTATAAAAGTATCTTAAATGAAATGAGCAC
TGAGAGTTCTCAGGGTCAGAAAGGAGTTGTAGGCCATTCTCTTTGCCTCT
CAGTTGTACTCCTGCCCTCTTTGAAGCCTCTGGACATGACAGAAAGTGTT
TGAAGTCATTAAATAATGTCACCATTGGGTAGTATGGTAATTGATCTACC
CGAACTGGTTATAGAATATATCATATATTCTTCACCACTCACCATTGATA
GATTCGAAGGCTGATTTTCTAAATTTCTCTTATAAATACAGCCGCTATAA
ACAAAGGTGTGTGTGTGTGTTTGCACGGGTGTATGTACTGTGTGTGTGTG
TGCATGTGTATAGTGTATTGACCTAAATTTCCTTGGAAAGTATTCCCTAT
AGTTTAGGATTGAAATTTTCTTCCTTTCTCAAACAAACCCAACATTACAC
AAAAATTATGAAGTATAATTTGTGTTGGCCAACCACTCTTGATCATGGAG
CACGCTCAGAAGTATGATTGAAATATCCAGTATTACACC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAGCACT
TGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACA
ACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTC
AGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCC
ATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGG
CGGTTCCTCAGAAAACTGGACATAGTACTACCGGAGGATCCAGCAATACC
TCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACAT
GCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAA
GAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACAT
CTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAAT
TCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACA
CATTCACAAAGAAACTCACACAATATGTATTCACTGATAAGTGGATATTA
GCCCCAAACCTAGGATACCCAAGATATAAGATATAATTTGCTAAACACAT
GAAACTCAAGAAGAATGAAGACTGAAGTGTGGACACTATGCCCCTC

Query= MSMg01no301_a23.b1 MSMg01no301_a23.b1 CHROMAT_FILE:
MSMg01no301_a23.b1 PHD_FILE: MSMg01no301_a23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:38:21 2005
         (671 letters)



>mm_chr17_59691948_59693019
          Length = 1072

 Score = 1096 bits (567), Expect = 0.0
 Identities = 649/687 (94%), Gaps = 20/687 (2%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccagtttactaccagtaataatttcattcttctttatgaaaaagcaaatctccaa 64
           ||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 722 gaattccagtttactacaaataataatttcattcttctttatggaaaagcaaatctccaa 663

                                                                       
Query: 65  catatacatatatatgcacatgtacacaaaacatacacacacatacatacacactcatac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 catatacatatatatgcacatgtacacaaaacatacacacacatacatacacactcatac 603

                                                                       
Query: 125 acatacacacacattcacacacatatataaacttatttgtatcaacaggaataggaatgt 184
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 gcatacacacacattcacacacatatataaacttatttgtatcaacaggaataggaatgt 543

                                                                       
Query: 185 tataaaagtatcttaaatgaaatgagcactgagagttctcagggtcagaaaggagttgta 244
           |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct: 542 tataaaagtatcttaaataaaatgagcactgagagttctcagggtcaaaaaggagttgta 483

                                                                       
Query: 245 ggccattctcttt-gcctctcagttgtactcctgccctctttgaagcctctggacatgac 303
           ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 482 ggccattctcttttgcctctcagttgtactcctgccctttttgaagcctctggacatgac 423

                                                                       
Query: 304 agaaagtgtttgaagtcattaaataatgtcaccattgggtagtatggtaattgatctacc 363
           |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 422 agaaagcgtttgaagtcattacataatgtcaccattgggtagtatggtaattgatctacc 363

                                                                       
Query: 364 cgaactggttatagaatatatcatatattcttcaccactcaccattgatagattcgaagg 423
            |||||| ||||||||| ||||| |||||||||||||||||||| |||||||||||||||
Sbjct: 362 tgaactgattatagaatgtatcacatattcttcaccactcaccaatgatagattcgaagg 303

                                                                       
Query: 424 ctgattttctaaatttctcttataaatacagccgctat----------aaacaaaggtgt 473
           ||||||||||||||||||||||||||||||||||||||          ||||||||||||
Sbjct: 302 ctgattttctaaatttctcttataaatacagccgctatttacacctataaacaaaggtgt 243

                                                                       
Query: 474 gtgtgtgtgt--------ttgcacgggtgtatgtactgtgtgtgtgtgtgcatgtgtata 525
           ||||||||||        ||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 242 gtgtgtgtgtgtgtgtgtttgcacgggtgtatgtactgtgtgtgtgtgtgcatgtgtatg 183

                                                                       
Query: 526 gtgtattgacctaaatttccttggaaagtattccctatagtttaggattgaaattttctt 585
           |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||
Sbjct: 182 gtgtattgacctaaatttccttggaaagtattccctatagtttagttttgaaattttctt 123

                                                                       
Query: 586 cctttctcaaa-caaacccaacattacacaaaaattatgaagtataatttgtgttggcca 644
           ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 122 cctttctcaaaacaaacccaacattacacaaaaattatgaagtacaatttgtgttggcca 63

                                      
Query: 645 accactcttgatcatggagcacgctca 671
           |||||||||||||||||||||||||||
Sbjct: 62  accactcttgatcatggagcacgctca 36


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1072
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1062
Effective search space:   701982
Effective search space used:   701982
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)