Query= MSMg01no301_c17.b1 MSMg01no301_c17.b1 CHROMAT_FILE:
MSMg01no301_c17.b1 PHD_FILE: MSMg01no301_c17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:38:30 2005
(322 letters)
>mm_chr17_79127807_79128528
Length = 722
Score = 615 bits (318), Expect = e-180
Identities = 321/322 (99%)
Strand = Plus / Minus
Query: 1 gagccagacagcccctctcacttaggactttcaggctttgtaggcttctcttttatttac 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 522 gagccagacagcccctctcacttaggactttcaggttttgtaggcttctcttttatttac 463
Query: 61 aaactgctggtgatgacacacagatcaagctgggtagttaaaagcttaagaaataggaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 aaactgctggtgatgacacacagatcaagctgggtagttaaaagcttaagaaataggaag 403
Query: 121 tatgggccagtgcgattgcttacctgtaaagtgtgcttccaagcctgccagctaacttgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 tatgggccagtgcgattgcttacctgtaaagtgtgcttccaagcctgccagctaacttgc 343
Query: 181 tctttggagctagcttctgtgcgtttcgaatgctctcatcggttagttttacttggtgga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 tctttggagctagcttctgtgcgtttcgaatgctctcatcggttagttttacttggtgga 283
Query: 241 catatctctggacggaatgcactagtttatattgtctatttagcatgttttagaagccga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 catatctctggacggaatgcactagtttatattgtctatttagcatgttttagaagccga 223
Query: 301 cacaaaccgtcatcatcattta 322
||||||||||||||||||||||
Sbjct: 222 cacaaaccgtcatcatcattta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space: 223169
Effective search space used: 223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no301_c17.g1 MSMg01no301_c17.g1 CHROMAT_FILE:
MSMg01no301_c17.g1 PHD_FILE: MSMg01no301_c17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:38:30 2005
(334 letters)
>mm_chr17_78960124_78960857
Length = 734
Score = 449 bits (232), Expect = e-130
Identities = 308/342 (90%), Gaps = 21/342 (6%)
Strand = Plus / Plus
Query: 1 tcagctggcactaagatgctacggtacggaagtgattgtggctataggaagcaagctacc 60
|||||||||||||||| |||||||||||||||||||||| |||||||| || |
Sbjct: 209 tcagctggcactaaga--------tacggaagtgattgtggctatacgaagcaaggtagc 260
Query: 61 cgtaaggacccatcagaaggagctggggagaaaaccacctcagaggcagagtgtatggcc 120
| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 cataaggacccatcagaaggagctggggagaaaaccaccacagaggcagagtgtatggcc 320
Query: 121 aggcctgcttcaagaccacgatgccgctgaagcatctcccgatgcatctctggacctccg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggcctgcttcaagaccacgatgccgctgaagcatctcccgatgcatctctggacctccg 380
Query: 181 cggcttgcctggacctcagtggcttccaccctgtgtctctctggcttcccccaccagcta 240
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 381 cggcttgcctggacctcagtggcttccaccctgtgtctccctgccttcccccaccagcta 440
Query: 241 ggaggagaaagaagcttctctctctctctctctctctctctccttccctccctccctccc 300
||||||||||||||||| | ||||| |||||| ||| ||| ||| ||||||||||||||
Sbjct: 441 ggaggagaaagaagcttttgtctctatctctc-ctccctc-cct-ccctccctccctcc- 496
Query: 301 tccctccctccctccctc----cctcc----ctccctccctc 334
|||| ||| ||||| ||| ||||| |||||||||||
Sbjct: 497 tccccccc-ccctctctctcttcctcctgccctccctccctc 537
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 734
Length adjustment: 9
Effective length of query: 325
Effective length of database: 725
Effective search space: 235625
Effective search space used: 235625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
