BAC Information

Click to search

BAC

Clone NameMSMg01-301I01
Chromosome17 (Build37)
Map Location 12,286,309 - 12,471,568
singlet/doubletdoublet
Overlap geneAgpat4, Tdgf1-ps2, Map3k4
Upstream genePark2
Downstream gene4732491K20Rik, LOC625753, Plg, Slc22a3, LOC100041192, Slc22a2, Slc22a1, Igf2r, Air, EG635617, Mas1, Mrgprh, Pnldc1, Mrpl18, Tcp1, Acat3, Acat2, Wtap, Sod2, Gpr31c, Tcp10c, Ttll2, Unc93a, Smok2a, Smok2b
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-301I01.T7 (MSMg01no301_i01.b1)MSMg01-301I01.TJ (MSMg01no301_i01.g1)
ACCAG427684AG427685
length846749
length of high quality
(start - end)		191 (40 - 230)377 (71 - 447)
definitionCHROMAT_FILE: MSMg01no301_i01.b1 PHD_FILE: MSMg01no301_i01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:38:55 2005CHROMAT_FILE: MSMg01no301_i01.g1 PHD_FILE: MSMg01no301_i01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:38:55 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,471,383 - 12,471,568)(12,286,309 - 12,286,685)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
TACCTTTTTTGATATGTTAGAACATGTGCAACACGATTTGCTATCATAAC
CCTTTTTAGATGGCTCTGTCATGGTAGGAGGATATGTGGTGTTTCTTTGG
ACACCACACTGTGCCAGGGCCGTGCCTCCCTGTGTGGGCCATGGGAAATG
CTGTCTGCTGCTGTTGAGCCTGTGCCCTTNCAGNGNAAGCAGCTGGGCTA
GGCCCTACAATCCTGGCAGGCGGGACTGTGCTTGCCCCTTCATTAGTGTG
CTTGCCAGAGCGGGTGTACAGGCGTTCTTTTTCCTTTCCCCTTTCTTCTT
TTTCCTCCTCCCTCTTTTCTTCCCTTCTCCCTCTTTTCTCCCTTCTCTTT
TCCTCTCTTCATTTCATTTATCCCTCTTTTTCCCCCCTTTTCCCCCCCTT
TTTTCCCCTTTCTCCTTTTTCTCCTTTTCCCTTTCCCCTCCCTCCGTTTT
CTCCCCCCTTTTTTTCCCTTTCTCCCCTTATTTACCCCCTTCCCCCATCT
TTCTCTCCCTTTTTTCTCCCCCTTTTTTCCCCCCCGCCTTTCTCTTCCTT
TCCGCTTTTTTTCCCCCCCTCTTCCTTCCCCCTTTCCCTTCCTTCCCATT
TCCTTCTCCCCTTTCTATTTCCTTATCGTCCCCTCTTCCTCCGCCTTTTT
TCTTTTTCCTACTCCGCCCCTCTTCCATTTTTCTCTCCTCTTCCTTTATT
CCCGTCCGCTTTATCTCTACTTATTCTTCGCCTTCTTTTTTCCCTCTCCC
CTCCCCTCCCCTTTTATTTTCTCCCCACATCTGTCTTCCCTCTTTT

TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXATCCCTGCCTTCCCTAGGGTGATGTGGGTA
GAGTGAGGGCCCGTCACGCACTGCTTATCCACATGCTGCTTTTGGGAACT
ATTCCAAGACCTATGATAATTTTTTCAAAATGTCTCATACACACATACAC
AGGTATACGCAAACACATACATACACATATATATACATACACATAAACAC
ACATATACATAGCTTTAAAAGTTTGCTCAATTGGAAAGAAGAATAAAACT
ATTATGAAATTTGCAGGAAAACAGGTAGACCTGGGAAGTAGCTTATTAAG
CGACGTGGCCCAGACTCCAAAAGAGAAGACTCGCACACTCCTTCACATAT
GCTGTAGTGGTTTGTATGTGTTTGGCCCAGGGAATAGCACTGTTAGAAGG
CGTGGCAGGAAGTTGTTGGAGGAAGTATGTCATTGTGGGCGTGGGCTCTA
AGACCCTCATCCTAGTTCCCTGCAAGCCAGCCTTTTATCGGCCCTCTTTA
TGATTATGTAGAATTCTCCCTTCCTCCTTGTCCCTTGCCTGCCCTGCACG
ATTGTCACGCTCCCCCCTCTTGATTATATTGCTCCTGTCCCTTCCGTATA
TTCGCCAACTCCACTCCTTTACTTATCATGTTGTTTTATTAATTACACTC
TCGTTCCGTCTCATTGTTATCTTTCCCCTTCATCTCTCTCACTTTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no301_i01.b1 MSMg01no301_i01.b1 CHROMAT_FILE:
MSMg01no301_i01.b1 PHD_FILE: MSMg01no301_i01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:38:55 2005
         (191 letters)



>mm_chr17_12471179_12471769
          Length = 591

 Score =  344 bits (178), Expect = 2e-99
 Identities = 184/186 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcataccttttttgatatgttagaacatgtgcaacacgatttgctatcataaccct 64
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 390 gaattcataccttttttgatatgttagaacatgcgcaacacgatttgctatcataaccct 331

                                                                       
Query: 65  ttttagatggctctgtcatggtaggaggatatgtggtgtttctttggacaccacactgtg 124
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 ttttagatggctctgtgatggtaggaggatatgtggtgtttctttggacaccacactgtg 271

                                                                       
Query: 125 ccagggccgtgcctccctgtgtgggccatgggaaatgctgtctgctgctgttgagcctgt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 ccagggccgtgcctccctgtgtgggccatgggaaatgctgtctgctgctgttgagcctgt 211

                 
Query: 185 gccctt 190
           ||||||
Sbjct: 210 gccctt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 191
Length of database: 591
Length adjustment: 8
Effective length of query: 183
Effective length of database: 583
Effective search space:   106689
Effective search space used:   106689
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no301_i01.g1 MSMg01no301_i01.g1 CHROMAT_FILE:
MSMg01no301_i01.g1 PHD_FILE: MSMg01no301_i01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:38:55 2005
         (377 letters)



>mm_chr17_12286109_12286885
          Length = 777

 Score =  714 bits (369), Expect = 0.0
 Identities = 375/377 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atccctgccttccctagggtgatgtgggtagagtgagggcccgtcacgcactgcttatcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atccctgccttccctagggtgatgtgggtagagtgagggcccgtcacgcactgcttatcc 260

                                                                       
Query: 61  acatgctgcttttgggaactattccaagacctatgataattttttcaaaatgtctcatac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acatgctgcttttgggaactattccaagacctatgataattttttcaaaatgtctcatac 320

                                                                       
Query: 121 acacatacacaggtatacgcaaacacatacatacacatatatatacatacacataaacac 180
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acacatacacaggtatacacaaacacatacatacacatatatatacatacacataaacac 380

                                                                       
Query: 181 acatatacatagctttaaaagtttgctcaattggaaagaagaataaaactattatgaaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acatatacatagctttaaaagtttgctcaattggaaagaagaataaaactattatgaaat 440

                                                                       
Query: 241 ttgcaggaaaacaggtagacctgggaagtagcttattaagcgacgtggcccagactccaa 300
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgcaggagaacaggtagacctgggaagtagcttattaagcgacgtggcccagactccaa 500

                                                                       
Query: 301 aagagaagactcgcacactccttcacatatgctgtagtggtttgtatgtgtttggcccag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagagaagactcgcacactccttcacatatgctgtagtggtttgtatgtgtttggcccag 560

                            
Query: 361 ggaatagcactgttaga 377
           |||||||||||||||||
Sbjct: 561 ggaatagcactgttaga 577


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 377
Length of database: 777
Length adjustment: 9
Effective length of query: 368
Effective length of database: 768
Effective search space:   282624
Effective search space used:   282624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |