BAC Information

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BAC

Clone NameMSMg01-302G07
Chromosome17 (Build37)
Map Location 42,542,874 - 42,543,218
singlet/doubletsinglet
Overlap geneLOC627626
Upstream genenone
Downstream geneOpn5, Gpr115, Gpr111, EG546797, Cd2ap, Tnfrsf21, LOC100043770, Gpr110, Gpr116
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-302G07.T7 (MSMg01no302_g07.b1)MSMg01-302G07.TJ (MSMg01no302_g07.g1)
ACCAG428295AG428296
length716805
length of high quality
(start - end)
327 (45 - 371)96 (75 - 170)
definitionCHROMAT_FILE: MSMg01no302_g07.b1 PHD_FILE: MSMg01no302_g07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:01 2005CHROMAT_FILE: MSMg01no302_g07.g1 PHD_FILE: MSMg01no302_g07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGTGGACTTATAAAACAAGCACATGAAGTTGGGAGGGGAATGTTGT
GAGAAGGAAAGGGGAGGAATTAGGGGAAATACAACTGGCTTGTGTTTGAT
CAAAATGTGTTATATATAATTGATATATATAATTATCAAACAATAAAAAA
GATTTAAAGTATCAGTTCATCATACACACACAGACACAGAACAAGCAATC
AAGCAAACTAATCCATAACTCTTTTATTGCACCATGGCCCTTATTCTATA
CTCCACTTCTTGATGTTATTGTGTATATCTTGTTTCCATCATATGCCCGC
TGGAACTGTTTTTTTTTTCCCGCCCCCCCCCGGCTAATTATATAGTTATT
GGATAAATGAATGACTAATCAACTTAAAAAATGTTTTCCATTAAGGCTTC
CAACACTAATGCTTTATCCTGATGTCGGCAAGTGTTTATACAAATGCTAA
TGTTTTCCTTCCTGGTTTCATAACATTTGTATTTATAGCATGTTTGCTCC
ATGGGCTTATCATCTCCTGGTGGTTTCCTAGCTATTTATTTCACCTGGGT
TTGGAGCTATCACGTTTGTTTATCGAATCTGCCTTTACCGCTTCACCCCA
ATGAAAGTTAACTTCATGCATGTATCTCAGCAAGCCTCACTGCTGCATCA
ATATGTGCCCAGTTCT
AATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAAAAGGACAACTCAGTCCCACTTGNG
GAGAGAAGAAAGCAATCACAAGTGNTGGAGGGAGAGTCTTCGGGAGGGAA
AATGGATGGGGTGGGGGGGTATCCCTTTCTCTTTCCCTTTCCCTCCTCAT
ACACCTATTCCCTCTCAACACCCAATCTCCCCCCCCCTTACTTTATTTCA
TCCCTTTTTTTCCCTTACTTTTCTCTTTCGTAATTTTTCTCTTTCATATA
ATTATATCTATTCTCTCCCCCAACCTTTTTTTTTTCTTCACCCCCCACCC
CCCCACCACCAAGAAAAAATTTTAAAGATGGACCCCTAAGGGCAAAGAAA
CCAAGTTAGTTTTTTGTTTTTTTAANTTGGTGTTGTGGTNNGCCCCAAAT
TTCCATTTCTAACACCTTTTGGGGGGGGGGGGCGCTCCTTTCCCCTCCAT
TCTCCTTTCTTCCATCTACACACGACCTTTTTTCCTACCCCCTCCCCCTC
CATTTATTTACCCCTTTACCCCCTCCCTTTTTTTCTTTTTTTTCTCCCCC
TCCCCTATTCTCCATCTTTATATTACCACCCCCTTCCCTCTTATCCCTTC
TCTCTTCTTCCACCAACCTTTCCCTTTTTTTCCTCCTATTTTTCTTATCC
CTCTTTCCCCCTCTATTCTCTTCCCCTCTTTTCCTATTCCCCCTTTCTTT
ATTAACCCCCATCCTCCTATCTACTTCCTCCCCTAATATATACCCCTTTT
TTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no302_g07.b1 MSMg01no302_g07.b1 CHROMAT_FILE:
MSMg01no302_g07.b1 PHD_FILE: MSMg01no302_g07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:01 2005
         (327 letters)



>mm_chr17_42542519_42543245
          Length = 727

 Score =  391 bits (202), Expect = e-113
 Identities = 296/348 (85%), Gaps = 39/348 (11%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcagtggacttataaaacaagcacatgaagttgggaggggaatgttgtgagaagg 63
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct: 700 ggaattcagtggacttataaaacaagcacatgaagttgggaggggaaagttgtgacaagg 641

                                                                       
Query: 64  aaaggggaggaattaggggaaatacaactggcttgtgtttgatcaaa--atg-tgttata 120
           |||||||||||||||||||| ||||||| ||| | |||| |||||||  ||| | |||||
Sbjct: 640 aaaggggaggaattaggggagatacaacgggcatatgttcgatcaaagcatgat-ttata 582

                                                                       
Query: 121 tataattgatatatata------------------------atta--------tcaaaca 148
           ||| ||| |||||||||                        ||||        |||||||
Sbjct: 581 tat-atttatatatataaatatatataaaacaatatatattattatatatatctcaaaca 523

                                                                       
Query: 149 ataaaaaagatttaaagtatcagttcatcatacacacacagacacagaacaagcaatcaa 208
           ||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 522 ataaaaaagatttgaagtatcagttcatcatacacacacagacacaaaacaaccaatcaa 463

                                                                       
Query: 209 gcaaactaatccataactcttttattgcaccatggcccttattctatactccacttcttg 268
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 462 gcaaactaatctataactcttttattgcaccatggcccttattctatactccatttcttg 403

                                                           
Query: 269 atgttattgtg-tatatcttgtttccatcatatgcccgctggaactgt 315
           ||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct: 402 atgttattg-gatatatcttgtttccatcatatgcccgctggaactgt 356


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 727
Length adjustment: 9
Effective length of query: 318
Effective length of database: 718
Effective search space:   228324
Effective search space used:   228324
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)