BAC Information

Click to search

BAC

Clone NameMSMg01-303B20
Chromosome17 (Build37)
Map Location 29,062,479 - 29,063,044
singlet/doubletsinglet
Overlap genenone
Upstream geneAnks1, Tcp11, 4930526A20Rik, Scube3, LOC100042764, Zfp523, Def6, Ppard, 1810013A23Rik, Fance, Rpl10a, Tead3, Tulp1, Fkbp5, 4930511I11Rik, Gm749, Clps, Tmhs, Srpk1, Slc26a8, Mapk14, LOC100043318, Mapk13, Brpf3, Pnpla1, 4930539E08Rik
Downstream genePxt1, Kctd20, Stk38, Sfrs3, LOC100042815, Cdkn1a, 9830134C10Rik, LOC100043341, Cpne5, Ppil1, BC004004, LOC100043348, Pi16, Mtch1, Fgd2, Pim1, 4933413N12Rik, Tbc1d22b, Rnf8, 1300018I05Rik, Mdga1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-303B20.T7 (MSMg01no303_b20.b1)MSMg01-303B20.TJ (MSMg01no303_b20.g1)
ACCAG428800AG428801
length744742
length of high quality
(start - end)		667 (69 - 735)567 (71 - 637)
definitionCHROMAT_FILE: MSMg01no303_b20.b1 PHD_FILE: MSMg01no303_b20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:56 2005CHROMAT_FILE: MSMg01no303_b20.g1 PHD_FILE: MSMg01no303_b20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAATACATATCTCAGGATGACTTTGAACTCCTGAGGCTAAGATTTTGG
AAAGAGCCAAGGGTCAGCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCC
TTCCTTCCTTCCTTCCTTCCTTTTTGTTTTGTTTGTTTGTTTTGTTTTGT
TTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCGAT
CTGTAGACCAGGCTGGAACTCAGAACATTCCTGTCTTTCTTGAGATAGGC
TCAAGCTGGCCTTGAAGCTGAGAGACCATACTCTTGTTGGATAGTTGTGG
GGAGCGGGTGTGGCGGCAGTCCCAAAGGTGCCAGAGACTGCAGCTAAGTC
ATATGACTTGCACCTGACTTCCTCATATAAGACACAAACATCTTGAGTGC
TGCGCAGGTGTACCAGGATTCAGGTGAATCCAATTTGGTGGAGATTTGCC
CCTGCTGCCCTGATTAGCTGAAGCTGCGTGCCTGGTGAGGTGGCGTGGCC
TGCTGTGCGTGGATGGGAACTGAGAGTATATAAGAGTGAGAGGCCCGGGT
TAGAGGGAGGATTATTATTCGAGAGAGGATTGTTATTATTGGGAGATATA
AACGAGGGAGAGATATAAACAGGGGAGATATAAACAAGGGAGATATATAG
AGAAAGAAGATATAGGACTGAATAAACGTGTGCAGAAGGATCCN

TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAAGGGTCACAACAGTAGCCAGGGGACTTTC
CAGGTACTGCTCCTCCCCCCTGCCCCCCCCCTCGGTGTTTCCTGAATTGG
AACATAAGAGTTGAGTTAATGAACAGAGAAACTTCCACTGTCTATTTATC
CATGTCCTGTGCAGGAGACAGACAGGTCCTGGTGAGTTACACACCTTGCC
CAGGTTTTGGAAACTCTCTCTGTATGTAGTACAGGCTGGTTTCAGATATG
CAACCCATCTGCCTCTATCTCTCAAGTGCTGTTTTTATAGGTCCAGATAT
GCAGGACCCTTCAAGGTGCTTTTTGATCTTCGCCTGTTAGCTTGTGATTT
CGCCCTGGAGAGGGGAGGGGAGACATGTCCATGGACAATGGTCTCCTCCT
CCCAGGCTTTCTGACCACAGTGTACACTCAGTAGGACCACATTTGACTGG
TTGCTATGGAAACAAACAATAGCATCTGTCACTGGGGGGGTGGGGACCAC
AGACCAAGTGAAAGGGGATAGAGTCTGCAGGAAGAGTTGGTGCTGGTGAC
ATTTTTACAGAGCTTCACGCCTCTTAGGATACAAGGTACACACGTGACTG
GCTCTGACACTTGGCTCTGTGGCGTTTCTTTCTTAGTGCTCTTGTTACAA
TCCTGAACTTGATTCTTCCTTCCTTCTTGGTGGCCTCTCTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no303_b20.g1 MSMg01no303_b20.g1 CHROMAT_FILE:
MSMg01no303_b20.g1 PHD_FILE: MSMg01no303_b20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:56 2005
         (567 letters)



>mm_chr17_29062279_29063244
          Length = 966

 Score = 1058 bits (547), Expect = 0.0
 Identities = 562/567 (99%), Gaps = 1/567 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagggtcacaacagtagccaggggactttccaggtactgctcctcccccctgcccccccc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 aagggtcacaacagtagccaggggactttccaggtactgctcctcccccctg-ccccccc 259

                                                                       
Query: 61  ctcggtgtttcctgaattggaacataagagttgagttaatgaacagagaaacttccactg 120
           ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 260 ctcagtgtttcctgaattggaacataagagttgagttaatgaactgagaaacttccactg 319

                                                                       
Query: 121 tctatttatccatgtcctgtgcaggagacagacaggtcctggtgagttacacaccttgcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tctatttatccatgtcctgtgcaggagacagacaggtcctggtgagttacacaccttgcc 379

                                                                       
Query: 181 caggttttggaaactctctctgtatgtagtacaggctggtttcagatatgcaacccatct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 caggttttggaaactctctctgtatgtagtacaggctggtttcagatatgcaacccatct 439

                                                                       
Query: 241 gcctctatctctcaagtgctgtttttataggtccagatatgcaggacccttcaaggtgct 300
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gcctctgtctctcaagtgctgtttttataggtccagatatgcaggacccttcaaggtgct 499

                                                                       
Query: 301 ttttgatcttcgcctgttagcttgtgatttcgccctggagaggggaggggagacatgtcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ttttgatcttcgcctgttagcttgtgatttcgccctggagaggggaggggagacatgtcc 559

                                                                       
Query: 361 atggacaatggtctcctcctcccaggctttctgaccacagtgtacactcagtaggaccac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 atggacaatggtctcctcctcccaggctttctgaccacagtgtacactcagtaggaccac 619

                                                                       
Query: 421 atttgactggttgctatggaaacaaacaatagcatctgtcactgggggggtggggaccac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 atttgactggttgctatggaaacaaacaatagcatctgtcactgggggggtggggaccac 679

                                                                       
Query: 481 agaccaagtgaaaggggatagagtctgcaggaagagttggtgctggtgacatttttacag 540
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 680 agaccaagtgaaaggggatagaggctgcaggaagagttggtgctggtgacatttttacag 739

                                      
Query: 541 agcttcacgcctcttaggatacaaggt 567
           |||||||||||||||||||||||||||
Sbjct: 740 agcttcacgcctcttaggatacaaggt 766


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 966
Length adjustment: 10
Effective length of query: 557
Effective length of database: 956
Effective search space:   532492
Effective search space used:   532492
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |