BAC Information

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BAC

Clone NameMSMg01-303L05
Chromosome17 (Build37)
Map Location 26,853,901 - 26,854,183
singlet/doubletsinglet
Overlap geneA930001N09Rik
Upstream geneGng13, Chtf18, Rpusd1, BC052484, Msln, Narfl, Haghl, Ccdc78, BC008155, Metrn, Fbxl16, Wdr24, 2610003J06Rik, Stub1, Rhbdl1, Rhot2, Wdr90, 9530058B02Rik, 0610011F06Rik, Wfikkn1, Rab40c, LOC100043160, Pigq, F430201B04Rik, D630044L22Rik, Solh, 1700022N22Rik, Rab11fip3, Decr2, Nme4, EG666609, Tmem8, Mrpl28, Axin1, Pdia2, Arhgdig, Rgs11, Itfg3, LOC100042643, Luc7l, EG383229, EG240055, C230078M08Rik, Dusp1, EG666668, Ergic1, Atp6v0e
Downstream geneBnip1, Nkx2-5, Kifc1, Phf1, Cuta, Syngap1, Zbtb9, Bak1, Ggnbp1, Itpr3, 2900010M23Rik, Ihpk3, Lemd2, LOC100042713, ENSMUSG00000073430, Grm4, LOC677010, Hmga1, AI413582, Nudt3, Rps10, Pacsin1, Spdef
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-303L05.T7 (MSMg01no303_l05.b1)MSMg01-303L05.TJ (MSMg01no303_l05.g1)
ACCAG429216AG429217
length757771
length of high quality
(start - end)
270 (43 - 312)201 (73 - 273)
definitionCHROMAT_FILE: MSMg01no303_l05.b1 PHD_FILE: MSMg01no303_l05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:41:41 2005CHROMAT_FILE: MSMg01no303_l05.g1 PHD_FILE: MSMg01no303_l05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:41:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGCGGAAT
TCCTATTTCTGCTTTTGAAAAATAAGTCAGACCTTCATTCTTTTTCTCAT
TTGCTGATACTGGATAGACAAAAGTCTAAAGACTCATCAGACCTAAATAC
TTTTCTCAAGGCTGTTTTCTCATTAAGTATGTTAGCTTCCAATTTATGTG
AGCAAGGGAGGCAAATTAAGACTTGAAACACAAGGGCCTGATCTTTGGAA
GATATCCACGTTTTGTTTTTTTTTTTGGGGGGGGGTGGATAGAAACGCCG
CTCACTCAATTTTGTCTGCTTTTCCAGTCCCAACTTTCTCTTTGCAATAC
CCATAATAGCAGAAGCTCCTCTGAATGTCCGCCTCCACTCTGTAGACCTG
GTACAGAAACACCCCCCCTACCTATTGACATATCTCCTTATCGTAGTTTT
ACCACTCACTCTTGTTTACAAGTAGTAAAATGGCTTGTTCCCTTGACCCA
TAGTCGCTCGATAAATTTTTCAGTGGTACGAACATTCACTTCATTAGTTG
AGTTCTATCTTTATTGTCACGCCCTGATTCACAGGATTTCTTCTCAACCC
ACCGATCTGACTTCCTGCTATTCTTATACCTGTCTCTCTCCATTACCTCC
TGACACTCTTTCCCCTTTGCCCTCCCCCCTGTACATTGCCTTACGCCTTT
ATTTGTTTTTACTTTCTGACACCCCATATACTTCATATATATTTTTTTCC
CCTATTN
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACTGATCACCTTGTGAAAGCCCACACCA
GAGTCTCTGTTCAGAGGACGCAGGCTCCAGTTGTGGCTACCACATAAGGG
TTTTTATACAAGAAAAATAAATGAATTAAGTCTGTTTTAAAAAGATAGAA
ATAATAAGATGGATGCTATATATGCTTTCACATGGTCCCTGGGGGGGGGG
GGGAAAGGCTTGTCATTGACTTTAATAACACATTTCGAAGTTGAAAAACA
TCATCCCATAACATTTCCTTTTTATCTGAAGAAGCATCTTGGAAAACTGC
ATGCACATACCCTGTATTGCTTGCTCGTCATACTGTATCACACAGGAGTA
AATAGGGTAATGTGCCTCTTCTCTGTGTTTTGTTCCCGCGTGCTTCAATA
CGTTTTGATTACACCCACTTTCTTGTTTTTAAAGTAACTTCTTCCCCTTC
CCATTTTTTTTCTTTTTTTCCCCTTTTTTTCTTACCTTCTCTTTCTACTG
TTTCCACTTTCGCTCCACTTTCCACCTTCTTTAAATTTATTTTTATACCT
TGTTGTTTTTTCGCCTTCCTTTCCTTTCCTTTCCCTTCTTTTTCCCCTAT
TACCCTCCCCCCTATACCTCATCTATGTTACTTTTCTCTTTTTTCCTTAC
TCCCCCCTTTCCTTCTGCCCACCCTTTCCCTTCTTACTTACACCTTCCTT
GCTCTTCCCATTTCTATTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no303_l05.b1 MSMg01no303_l05.b1 CHROMAT_FILE:
MSMg01no303_l05.b1 PHD_FILE: MSMg01no303_l05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:41 2005
         (270 letters)



>mm_chr17_26853747_26854418
          Length = 672

 Score =  462 bits (239), Expect = e-135
 Identities = 265/283 (93%), Gaps = 18/283 (6%)
 Strand = Plus / Minus

                                                                       
Query: 6   aattcctatttctgcttttg-aaaaataagtcagaccttcattctttttctcatttgctg 64
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 437 aattcctatttctgcttttgaaaaaataagtcagaccttcattctttttctcatttgctg 378

                                                                       
Query: 65  atactggatagacaaaagtctaaagactcatcagacctaaatacttttctcaaggctgtt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 atactggatagacaaaagtctaaagactcatcagacctaaatacttttctcaaggctgtt 318

                                                                       
Query: 125 ttctcattaagtatgttagcttccaatttatgtgagcaagggaggcaaattaagacttga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 ttctcattaagtatgttagcttccaatttatgtgagcaagggaggcaaattaagacttga 258

                                                                       
Query: 185 aacacaagggcctgatctttggaagatatccacgtttt-------gttttt--------- 228
           ||||||||||||||||||||||||||||||||||||||       ||||||         
Sbjct: 257 aacacaagggcctgatctttggaagatatccacgtttttttttttgtttttgtttttgtt 198

                                                      
Query: 229 ttttttggggggggg-tggatagaaacgccgctcactcaattt 270
           ||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 197 ttttttggggggggggtggatagaaacgccgctcactcaattt 155


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 270
Length of database: 672
Length adjustment: 9
Effective length of query: 261
Effective length of database: 663
Effective search space:   173043
Effective search space used:   173043
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)