Query= MSMg01no303_o07.b1 MSMg01no303_o07.b1 CHROMAT_FILE:
MSMg01no303_o07.b1 PHD_FILE: MSMg01no303_o07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:55 2005
(317 letters)
>mm_chr17_15534440_15535159
Length = 720
Score = 499 bits (258), Expect = e-146
Identities = 296/316 (93%), Gaps = 13/316 (4%)
Strand = Plus / Plus
Query: 4 ggaattctcagatctctcaggctgtattttgagcagcctacaaggacgactatgttgtag 63
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 ggaattctcagagctctcaggctgtattttgagcagcctacaaggacgactatgttgtag 253
Query: 64 gagtattagtgccctatttggagagtttccttgtctcagcatct----------tatatg 113
||||| |||| ||||||||||||||||||||||||||||||| ||||||
Sbjct: 254 gagtaggagtgagctatttggagagtttccttgtctcagcatctatttacttcttatatg 313
Query: 114 cctattaagacttaacctgttgtctagctgtaaaattcctaatttatttgtatgttggtt 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 cctattaagacttaacctgttgtctagctgtaaaattcctaatttatttgtatgttggtt 373
Query: 174 ttttttt---cagtcatcttgtaataactcctttagggaacaaagaacttcattacatgc 230
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 ttttttttttcagtcatcttgtaataactcctttagggaacaaagaacttcattacatgc 433
Query: 231 ttttagcaataaagaaaaacaataataacctaatatccacagttgtcttttggtgattga 290
||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct: 434 ttttagcaataaagaaaaacaataataacttaatatccacagctgtcttttggtgattga 493
Query: 291 ttgattgattgattga 306
||||||||||||||||
Sbjct: 494 ttgattgattgattga 509
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 720
Length adjustment: 9
Effective length of query: 308
Effective length of database: 711
Effective search space: 218988
Effective search space used: 218988
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no303_o07.g1 MSMg01no303_o07.g1 CHROMAT_FILE:
MSMg01no303_o07.g1 PHD_FILE: MSMg01no303_o07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:55 2005
(611 letters)
>mm_chr17_15696053_15697060
Length = 1008
Score = 880 bits (455), Expect = 0.0
Identities = 469/475 (98%), Gaps = 3/475 (0%)
Strand = Plus / Minus
Query: 1 caatatttcactattaaaactgacactgaaaattacctcttaccgaatgacctttttgtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 caatatttcactattaaaactgacactgaaaattacctcttaccgaatgacctttttgtg 413
Query: 61 tgtatatgtatataatatctccttgttcctgttttattcagtgttttctttgtcacaggc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 tgtatatgtatataatatctccttgttcctgttttattcagtgttttctttgtcacaggc 353
Query: 121 tgatttacttatttacttaaaaataaatgtattggatagcgtataaacataaaacaaaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 tgatttacttatttacttaaaaataaatgtattggatagcgtataaacataaaacaaaga 293
Query: 181 taagatgagttttgtctaattggataagcttaaataaaaacaccaatgccccccaataga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 taagatgagttttgtctaattggataagcttaaataaaaacaccaatgccccccaataga 233
Query: 241 atgatagagttaataatattttagaaataatttccggcggggggagggtatagggacctt 300
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 atgatagagt---taatattttagaaataatttccggcggggggagggtatagggacctt 176
Query: 301 tgggatagcatttgaaatgtaaatgaagaaaatatctaacacacatatatataaataaga 360
||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||
Sbjct: 175 tgggatagcatttgaaatgtaaatgaagaaaatatctaataaatatatatataaataaga 116
Query: 361 aataatttccatatcactcttgggtcatccttgaagtcttcactcagttattcagaattc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115 aataatttccatatcactcttgggtcatccttgaagtcttcactcagttattcagaattc 56
Query: 421 tctgttcctggtaagaatcccaagtgtaaaactatataccaacccaaaccctgat 475
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55 tctgttcctggtaagaatcccaagtgtaaaactatataccaacccaaaccctgat 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1008
Length adjustment: 10
Effective length of query: 601
Effective length of database: 998
Effective search space: 599798
Effective search space used: 599798
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
