BAC Information

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BAC

Clone NameMSMg01-304B02
Chromosome17 (Build37)
Map Location 65,712,761 - 65,713,509
singlet/doubletsinglet
Overlap geneE130009J12Rik
Upstream geneLOC100043582, Man2a1, 4930583I09Rik, LOC100043871
Downstream geneLOC668655, LOC674701, Vapa, Txndc2, Rab31, Ppp4r1, Ralbp1, LOC100043873, LOC100043592, Twsg1, Ankrd12, 5430411C19Rik, Ndufv2, ORF19, Ddx11, LOC100043599, LOC100043875, 1110012J17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-304B02.T7 (MSMg01no304_b02.b1)MSMg01-304B02.TJ (MSMg01no304_b02.g1)
ACCAG429472AG429473
length1,2521,282
length of high quality
(start - end)
656 (90 - 745)749 (95 - 843)
definitionCHROMAT_FILE: MSMg01no304_b02.b1 PHD_FILE: MSMg01no304_b02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:42:12 2005CHROMAT_FILE: MSMg01no304_b02.g1 PHD_FILE: MSMg01no304_b02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:42:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCCCAATTCNNNNNNNACCATTGGGCCTAAGACTCCTATGGGAGAGGAT
CCGCGGAATTCACAGCATCTTTGGAGCTTTTAAGACTTGGTCTCTGTTTC
TTGTACCTTCACTCAGCCTCTTTTTCTTCTGTTTTGTCCTATTCAGATGT
GCTAGCTTTTCTTTTATCTTATTATTTTTATGTTAATTATATTATTTATA
ATTACATTTATTATAATATTATCTCTTAGAAGTCTGTTTTTTAATGAGAT
AGAAAGAGAGATAGATCCAGATGGGAGGGGAGGTGGGAAGGAATTGGGAG
ACACTGAGGAAGGAGGGAACTGTAATTAGGATAAATGATGTGAGAAAAAA
CATCTATTTTCAATAAAAGGGACAAAGATTTTTGAAAAGAAAGGAAGGAA
GAAAGATTTGGAAAAAAAAAAAAGAAAAATGCTTCCATAAGATCAGGTGG
TAGGCAGGCCTGTAGGATACTTTGTTAATTAATGATGATGGGGGAGGGCC
CAGACCATCCTGAGTGGGGCCATCTTTGGGCTAGTGGTCCTGGGTTCTAT
AAGAAACGAGGCTGAGCAAGTCATGGAGCAAGTCAGTTAGAGCACTCCTC
CATGGCCTCTGCATCAGCTCCTGCCTTCAGGATCTGACCTGATTTGAGTT
CCTGCCTTGGCCTCCCTCAGTGAACTGGGACTTGGCTTATGTAAGTGAAA
TAAACCCCATTTCCCTCAGGTTGTTCTCAGTCACACTGTTTCAGTGTAGC
AACAGTAGCCCTAGCAGAAACACATGGTACAGTTTTGTTTTGGTTTGTTT
TCTATTCTTTTAGTTTATCTATGTTTTTAAGGCTCAAATTTATTCAACTA
TAACATATAGTTGAAACAAGCTCTTTAAATTTAATTTATTCCCCACTTTA
AAATAAGTAAAATTTTGAACTTTTTTACATACTGTACCTATCGATTTTTT
TGGATCAAAACCCTTTCTCCGTTATTTTTAATGGGGGTGCAACATTTTGT
CCTTCCCCGTAATAATTTTCAATATTTACATAAATCCGGTTGTTATAAAC
CTGTTAAATATTTTTTACACTTCCCCCAAAATTATTCATAGTTAAAAATC
TTATTACTCTTGCCTCATCACTTTGCTATAATCAACAATCTTTAATCTCT
CCTCCCTCCTCATTTATATCAACAATTTTTAAATTTTTTATGTTAACAGC
TTATAATATGTTTATTCCTTTCTTTTTTCATCTCTTTTATAATAACCAAT
TT
NNCCCGATCTTNNNNNAACGCATGGATGCTGGGGCGCCXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTCTTAAGCTTGCAAACAGAG
AGGGATGCTCCCCAGAACACCCTGCCTAGTGTTAGTAGTCCTATCCAGGA
GCTCTGGGTTTGATTGAGAGACCCTGCCTCACACAGTTACATAGAAGATA
GTTATTGAGGAAGGCTCCTGGTGACAACCTCAGCTTTTTACATGCATGCA
TCTTTACTTGCATGCATACCTTCATCAAAACATCTAAACATGCACACTAC
ATACATGTACGTGCAGAAAAGGAAACAAAAAGTACACACAGGTGTGCACA
CACGCACGTATCCACAGGAGTCCCCTGGTCCAGTGGTCTTCTTATATCCA
AGGAGAGTCGAATTTTATAGCCCAAACTGGCTTTACCAAGACCACATTCA
AGAGTAGAAGCAGGAGAGTAGACGTGGAATCAGAACTAAGATTTTCCCAG
TCCCACCTGGGCAAAGATTCTTTCAATTTTATAGAACTGTAGTAATATTC
TAAGGTTTGAAATAAGCGTTTAGGGAAAGAAACAGTATACATTTAAAAAG
GACCAACATGAATTTTGTTAACCTCTCCAGTAAAGTCTTTGAGATACCAG
AATAAAAAAATGAAAAGGCACTCATGGTTACCTAGCAATGAGATGTCTGG
TTTTATGTGTCATCTTGTTTGAGCTATCAACCTTTGGCCAGTTCACCAAA
CACTCGTTATGCAAGTGTCTATGAAAGAGTTGTTGGGAGATAGGAACATT
GACTTGGTATGCTGAGGTGAAGAGATTCCCTTCTTTGCTTGAGAGGTTCA
AATCCAGTGAATTCAGGGCTTGATGAGAACAGAAAGCCTGGCCTTTAGGT
GGTAGGAACAGCCTGCTTTTCCAGTGGTTGAGCTTGGGACTGCAGTTGCT
TTCAGGCTTTCGATTCAAACTGAAATTGGGATAATTACCCTGTATGAAAG
ACCAGCTGGACACTTGCTTCTTGGGAATGGATTTTGGGGGGGGGCTTAAA
AAAANACCCTCCCCACCACATTATTCCTCTCTTCTTTTAAACCTCCTCTT
AATGCCTGTATTACCTACTTAACCTCATTTTTTCACATATCACTCATTCT
CTTAACCTCTTTAGCTTTTTTTATATTGTTCCCCCCCCCCCCTCTTTAGA
CACTTCCAGCCCNACCCCTTTACTCCTTTCACTACGTCCATCTACAAATA
TCTGACAGTCTTTATACTCATTAACACCTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no304_b02.g1 MSMg01no304_b02.g1 CHROMAT_FILE:
MSMg01no304_b02.g1 PHD_FILE: MSMg01no304_b02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:42:13 2005
         (749 letters)



>mm_chr17_65712560_65713708
          Length = 1149

 Score = 1386 bits (717), Expect = 0.0
 Identities = 741/749 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   acagagagggatgctccccagaacaccctgcctagtgttagtagtcctatccaggagctc 60
           |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||
Sbjct: 950 acagagagggatgctccccagaacaagctgcctagtgttagtagtcctatccaggagctc 891

                                                                       
Query: 61  tgggtttgattgagagaccctgcctcacacagttacatagaagatagttattgaggaagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 890 tgggtttgattgagagaccctgcctcacacagttacatagaagatagttattgaggaagg 831

                                                                       
Query: 121 ctcctggtgacaacctcagctttttacatgcatgcatctttacttgcatgcataccttca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 830 ctcctggtgacaacctcagctttttacatgcatgcatctttacttgcatgcataccttca 771

                                                                       
Query: 181 tcaaaacatctaaacatgcacactacatacatgtacgtgcagaaaaggaaacaaaaagta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 tcaaaacatctaaacatgcacactacatacatgtacgtgcagaaaaggaaacaaaaagta 711

                                                                       
Query: 241 cacacaggtgtgcacacacgcacgtatccacaggagtcccctggtccagtggtcttctta 300
           ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||
Sbjct: 710 cacacaggtgtgcacacacgtgcgtatccacaggagtcccctggtccagtggtcttctta 651

                                                                       
Query: 301 tatccaaggagagtcgaattttatagcccaaactggctttaccaagaccacattcaagag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 tatccaaggagagtcgaattttatagcccaaactggctttaccaagaccacattcaagag 591

                                                                       
Query: 361 tagaagcaggagagtagacgtggaatcagaactaagattttcccagtcccacctgggcaa 420
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 590 tagaagcaggagagtagacgtggaatcagaactaagattttctcagtcccacctgggcaa 531

                                                                       
Query: 421 agattctttcaattttatagaactgtagtaatattctaaggtttgaaataagcgtttagg 480
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 agattatttcaattttatagaactgtagtaatattctaaggtttgaaataagcgtttagg 471

                                                                       
Query: 481 gaaagaaacagtatacatttaaaaaggaccaacatgaattttgttaacctctccagtaaa 540
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 gaaagaaacagtatacattaaaaaaggaccaacatgaattttgttaacctctccagtaaa 411

                                                                       
Query: 541 gtctttgagataccagaataaaaaaatgaaaaggcactcatggttacctagcaatgagat 600
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 410 gtctttgagataccagaataaaaaaacgaaaaggcactcatggttacctagcaatgagat 351

                                                                       
Query: 601 gtctggttttatgtgtcatcttgtttgagctatcaacctttggccagttcaccaaacact 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 gtctggttttatgtgtcatcttgtttgagctatcaacctttggccagttcaccaaacact 291

                                                                       
Query: 661 cgttatgcaagtgtctatgaaagagttgttgggagataggaacattgacttggtatgctg 720
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 cgttatgcaagtgtctatgaaagagttgttgggagataggaacattgacttggtatgctg 231

                                        
Query: 721 aggtgaagagattcccttctttgcttgag 749
           |||||||||||||||||||||||||||||
Sbjct: 230 aggtgaagagattcccttctttgcttgag 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 749
Length of database: 1149
Length adjustment: 10
Effective length of query: 739
Effective length of database: 1139
Effective search space:   841721
Effective search space used:   841721
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)