BAC Information

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BAC

Clone NameMSMg01-304C10
Chromosome17 (Build37)
Map Location 18,079,918 - 18,080,663
singlet/doubletsinglet
Overlap genenone
Upstream geneBC002059, BC018101, Zfp97, EG382161, LOC676238, EG626854, LOC100041965, Riok2, Lix1, LOC383297, Lnpep, EG665140, LOC100041519, EG626942, 4930546H06Rik, Has1, Fpr1, Fpr-rs2, LOC665183, LOC670250, EG665187, LOC546683
Downstream geneFprl1, LOC627060, Fpr-rs4, EG637021, EG665210, Vmn2r92, EG665227, EG627132, LOC100041612, Vmn2r95, Vmn2r-ps114, EG433070, Vmn2r-ps115, Vmn2r-ps117, LOC100042183, EG627367
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-304C10.T7 (MSMg01no304_c10.b1)MSMg01-304C10.TJ (MSMg01no304_c10.g1)
ACCAG429529AG429530
length1,3491,366
length of high quality
(start - end)		797 (89 - 885)747 (89 - 835)
definitionCHROMAT_FILE: MSMg01no304_c10.b1 PHD_FILE: MSMg01no304_c10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:42:24 2005CHROMAT_FILE: MSMg01no304_c10.g1 PHD_FILE: MSMg01no304_c10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:42:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCCCTTCCCNNNNNNNCCATTGGGCCTAAGACTCCANAGGGAGAGGATC
CGCGGAATTCTTTAAGAACCTATAATCCACTAAATGGAAAATCTCAAAGA
ATGGCTAGTTTTCTTCACGTTCACCACATATCATAATTAAATTAAGATCA
GAAGAACAATCTAAATAGATATGGAACTCCTATTGAAATGGAAGCAGTCA
TTACTAATCTAAAGGCACAGGGGGGAGGGTTATCCCAGAATTCTACCAGA
TTTTCACAGAAGAGTTAATACTAATATTCCTCAAATTAGTCCACAAATTA
GAAACAGAAGGAACATTGCCTGATTCATTTTATGAGGTCTCAGTTACCCT
GTTACCAGACAATGTAAAGACCCAACAGAGAAACACCATTTTAGAATGAT
TTCCAATATGAACATAAATACAAAGGGACACATAAAATACTTGCAAACCA
CATGGAAGAATACAGAACAAGATCATCCTCCATGGTCTAGTAGGCTTCCC
CTGAAATACAGGGATGGTTCAGCATATGAAAATCAGTAAATATAGTCCAC
CATATATATAAACTGAAAGATAAAATCATATATGATTATCTCTCTGACAC
CTGTCACCCCATTGATTGCCAAGGTTGATGTGGTTGATCTGGCTGCTTAG
GCAGTTATCCCCTTCCTCCCACATGGCTCTATATGCATCCCTTCTGAAAC
TTTGAGCTTAAAGAGGATGACCTTCCCAGAACAGAGAAGGATAGTTCTTT
GGCCAAGATTATGCAAGGAGCTTCACTCCACTGCTAGAACCTCCAAACAA
GTTCTCAAGATTACCTCATTAGATGTAGGAAAGGCCTTTGATAAAATTTA
ACACTTCATGATAAAAATTATGAAAAGAACAGGAACACAGGGGATATACC
TAAACATAATAAAGGAAATTATAGTAAACCTATAGCCGACATAAAGTCTA
ATGGAGAGGAAGTAAAGAAACTCTACTAAATCAGGAACAAAACATGATGG
TCCCTCCCCTTATTTTAATAAAAAAATTGGAGTTCGGCTAAGCAATAGGA
CACTTAAAAAATCTCCGGGTTGCCATTANAAAGAAAAAACCCCTTTTCTT
TTTTCTATGGGAGAAGAATGTTCAGGACCCAAAATCCCCTGTTTTTCTAG
TTAAAAACTTCTTCAGGAGTGGGCGGAGAATTCAAAACCTAAATTTTTTC
ATTAAGCCCTGAAAAACGGGAAAACTTTTATCCCCCATAAATTTGGACCC
ACACGGAATCAGAGAATCTCTTTAAAAAATAAAAAATGTGTGTATAAGGT
GGAAATATGGCTTTATCCTGATTTAACCCCCCTTTTTNTTTATCAACTA

NNNCCTTATCNNNNNNNACGATGGAGGCGGXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCTATCAATGTCTGTGAGATT
TTTATATAAATGGTAGAACCTTCCCCACAGCACTGAAAATAACTGCCATA
AGCATTCAACTCAGCTAGACCCTGACAAAATCCCTTCTATCACAGAGGTT
GGTGTTTACCTGATGGGCTGCCTGTGATTGTATTCTGACTGTGCTGGAAG
ATAACTCTGTATATTAAATCTGCTTTATGAATTGCCCTGAGAAATCATGA
GCTAGCAAACAAAACCAGACTTTCAATGAAAAGAAGAATCTGAAGATGAA
AAAAAAGATCAGGAGATACAGAGGGGCAGATACCAAAGCTGTATATCTCA
ACTAAATGAATACAGGCCAGATAAATAATAGGTCTCCCTAAAATAGATTT
AAAGAATACTCACTAAGTAGTTATTCTGACTATGTACACAGAAAACAACA
CAGGCTTCAGTTCATGGAAATATAGACCTCAATTTTAAGGCCACAAGCAA
GAATAGAAAAAATGAGTTCAAGATCAAGAAAAAGTTAGGGGTACAACCAC
TTTCATTCCTAATTAACAGGAAGTTAACTAATGTATATATTAAATACAAA
TCTGTATTAAGTGAATGCAGAAAATATGTTCGGTAATTGCATCTTACGAT
CTTTCACTGTAAAATTACTGTTTTCTGTCATGAACAAGTTTAATTTTATT
TCTGACTATAAAACAAGTTGAATATTTTTCAAAGGATGCAATCCTATTAT
TGACAATGAACAAGCCAATTCTAAAGACTCATACNACCTGAAATATATAG
TTTTCACATGTGGACTTGATGAATATTGATGGCTAAGCTGATAAAAGGAG
AAAGCAGAGAAAAAGGGAAAGTACCAAAGATATTATTTTTGTTGAAGAAG
AAAACATCCACTTTCCCGCAACTAAGGTTATGAAAAATTTTGTATTTTGT
TGGGAATAACTAGAACCTTAAAAAAAAAATCTCCCCGAATACTGCCCCCA
AAATAAAAAAAAAGCGGGGGCCATTTTTCTTTTTTAATTCCCAAAGGGGG
AACCCCCCAAACCGCGGATTTTTTGCAAAAAAATTTTTTCCCCCCCCCTG
AAATTATTTAACCTAGGGGTAAAAAACAAAAAGCTTGGGAAAACCTCCAA
AGGGGCTGGTTATTTCCTTTGCCCAATTTCCCTCCCAATTAACCACCTCT
TCATTCTCTTATAATATGGAGAGAATTCCTATAATTATGTTCGTATAGAT
CCTTAAATTAGATCNNNTATANNANCNCNNTCTTNNTNNGCGAAAAATAT
CTTATCTCTAACAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no304_c10.g1 MSMg01no304_c10.g1 CHROMAT_FILE:
MSMg01no304_c10.g1 PHD_FILE: MSMg01no304_c10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:42:24 2005
         (747 letters)



>mm_chr17_18079718_18080864
          Length = 1147

 Score = 1419 bits (734), Expect = 0.0
 Identities = 743/746 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtctgtgagatttttatataaatggtagaaccttccccacagcactgaaaataactgcca 60
           |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||
Sbjct: 946 gtctgtgagatttttatataaatggtagaacaatccccacagcactgaaaataactgcca 887

                                                                       
Query: 61  taagcattcaactcagctagaccctgacaaaatcccttctatcacagaggttggtgttta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 886 taagcattcaactcagctagaccctgacaaaatcccttctatcacagaggttggtgttta 827

                                                                       
Query: 121 cctgatgggctgcctgtgattgtattctgactgtgctggaagataactctgtatattaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 cctgatgggctgcctgtgattgtattctgactgtgctggaagataactctgtatattaaa 767

                                                                       
Query: 181 tctgctttatgaattgccctgagaaatcatgagctagcaaacaaaaccagactttcaatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 tctgctttatgaattgccctgagaaatcatgagctagcaaacaaaaccagactttcaatg 707

                                                                       
Query: 241 aaaagaagaatctgaagatgaaaaaaaagatcaggagatacagaggggcagataccaaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 aaaagaagaatctgaagatgaaaaaaaagatcaggagatacagaggggcagataccaaag 647

                                                                       
Query: 301 ctgtatatctcaactaaatgaatacaggccagataaataataggtctccctaaaatagat 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 646 ctgtatatctcaactaaatgaatacaggccagataaataataggtctccctaaaataggt 587

                                                                       
Query: 361 ttaaagaatactcactaagtagttattctgactatgtacacagaaaacaacacaggcttc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 ttaaagaatactcactaagtagttattctgactatgtacacagaaaacaacacaggcttc 527

                                                                       
Query: 421 agttcatggaaatatagacctcaattttaaggccacaagcaagaatagaaaaaatgagtt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 agttcatggaaatatagacctcaattttaaggccacaagcaagaatagaaaaaatgagtt 467

                                                                       
Query: 481 caagatcaagaaaaagttaggggtacaaccactttcattcctaattaacaggaagttaac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 caagatcaagaaaaagttaggggtacaaccactttcattcctaattaacaggaagttaac 407

                                                                       
Query: 541 taatgtatatattaaatacaaatctgtattaagtgaatgcagaaaatatgttcggtaatt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 taatgtatatattaaatacaaatctgtattaagtgaatgcagaaaatatgttcggtaatt 347

                                                                       
Query: 601 gcatcttacgatctttcactgtaaaattactgttttctgtcatgaacaagtttaatttta 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 gcatcttacgatctttcactgtaaaattactgttttctgtcatgaacaagtttaatttta 287

                                                                       
Query: 661 tttctgactataaaacaagttgaatatttttcaaaggatgcaatcctattattgacaatg 720
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 tttctgactataaaacaagttgaatatttttcaaaggatgcaatcctattattgacaatg 227

                                     
Query: 721 aacaagccaattctaaagactcatac 746
           ||||||||||||||||||||||||||
Sbjct: 226 aacaagccaattctaaagactcatac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 747
Length of database: 1147
Length adjustment: 10
Effective length of query: 737
Effective length of database: 1137
Effective search space:   837969
Effective search space used:   837969
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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